RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 URODP06132 367 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 BMP1P13497 986 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 CKMT2P17540 419 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 ITGALP20701 1170 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 IL10P22301 178 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 PSMA4P25789 261 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 HNF1BP35680 557 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 HTR6P50406 440 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 APOFQ13790 326 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 GTF2H2Q13888 395 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 RABL3Q5HYI8 236 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 GTF2H2CQ6P1K8 395 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 CNKSR3Q6P9H4 555 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 ZBTB49Q6ZSB9 765 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 ITIH5Q86UX2 942 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 CARM1Q86X55 608 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 ZFAND4Q86XD8 727 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 KIAA2013Q8IYS2 634 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 CHCHD4Q8N4Q1 142 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 OR4F6Q8NGB9 312 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 LKAAEAR1Q8TD35 194 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 DDI1Q8WTU0 396 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 ZNF296Q8WUU4 475 aaPredicted RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 NAT14Q8WUY8 206 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 ZNF689Q96CS4 500 aaPredicted RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 VWCEQ96DN2 955 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 PRPF18Q99633 342 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 ALG2Q9H553 416 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 PAK6Q9NQU5 681 aaPredicted RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 SLAMF8Q9P0V8 285 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 SUN2Q9UH99 717 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 TSR3Q9UJK0 312 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 PTBP2Q9UKA9 531 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 PADI4Q9UM07 663 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 RNF11Q9Y3C5 154 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 PRSS21Q9Y6M0 314 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 SLC4A7Q9Y6M7 1214 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 DYTNA2CJ06 578 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 KLHL33A6NCF5 533 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 SOCS2O14508 198 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 TAPBPO15533 448 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 ZNF821O75541 412 aaPredicted RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 SLC25A14O95258 325 aaPredicted RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 CLDN7O95471 211 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 S100BP04271 92 aaPredicted RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 GPIP06744 558 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 BPIP17213 487 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 DGKAP23743 735 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 GKP32189 559 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 RGS4P49798 205 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 EEFSECP57772 596 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 EMX2Q04743 252 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 LIPEQ05469 1076 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 PRKG2Q13237 762 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 TIGD2Q4W5G0 525 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 LYPLAL1Q5VWZ2 237 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 CWF19L1Q69YN2 538 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 IL27RAQ6UWB1 636 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 DDX53Q86TM3 631 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 ADGRG5Q8IZF4 528 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 MYO1HQ8N1T3 1032 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 CLDN19Q8N6F1 224 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 METTL25Q8N6Q8 603 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 PACRGLQ8N7B6 248 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 FAM126AQ9BYI3 521 aaPredicted RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 NSUN3Q9H649 340 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 IPPKQ9H8X2 491 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 MRPL17Q9NRX2 175 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 AGPAT4Q9NRZ5 378 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 DUS2Q9NX74 493 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 ELOVL2Q9NXB9 296 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 LSM7Q9UK45 103 aaKnown RBP9.93□□□□□ -0.82
VPS53-220ENST00000576149 CLEC4EQ9ULY5 219 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 AURKCQ9UQB9 309 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 OARD1Q9Y530 152 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 COMMD3-BMI1R4GMX3 469 aa9.93□□□□□ -0.82
VPS53-220ENST00000576149 MYOCOSA0A1B0GUC4 107 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 GRXCR2A6NFK2 248 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 LSM1O15116 133 aaKnown RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 OR6B1O95007 311 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 OTCP00480 354 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 MYCP01106 439 aaPredicted RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 ITGB6P18564 788 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 UGT1A6P19224 532 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 UGT1A1P22309 533 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 UGT1A4P22310 534 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ACRV1P26436 265 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 OXTRP30559 389 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 UGT1A3P35503 534 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 UGT1A5P35504 534 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 ARL1P40616 181 aaPredicted RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 LMAN2Q12907 356 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 TRAF3Q13114 568 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 NHSL2Q5HYW2 709 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 MPP7Q5T2T1 576 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 GPRC6AQ5T6X5 926 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 INTS11Q5TA45 600 aaKnown RBP9.92□□□□□ -0.82
VPS53-220ENST00000576149 NANOGP8Q6NSW7 305 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 SLC39A5Q6ZMH5 540 aa9.92□□□□□ -0.82
VPS53-220ENST00000576149 HTR3DQ70Z44 454 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms