RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CERS6Q6ZMG9 384 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 TMEM26Q6ZUK4 368 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 PLXDC1Q8IUK5 500 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 HM13Q8TCT9 377 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 NCSTNQ92542 709 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 CCM2Q9BSQ5 444 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 AP1M1Q9BXS5 423 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 SEMA6CQ9H3T2 930 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 ASCL3Q9NQ33 180 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 SCHIP1Q9P0W5 487 aaPredicted RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 ZNF624Q9P2J8 865 aaPredicted RBP13.14□□□□□ -0.31
CLK3-216ENST00000564468 ANAPC5Q9UJX4 755 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 TCAF1Q9Y4C2 921 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 LOXL2Q9Y4K0 774 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 AHCTF1Q8WYP5 2266 aa13.14□□□□□ -0.31
CLK3-216ENST00000564468 IGHV5-10-1A0A0J9YXX1 117 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 TLX3O43711 291 aaPredicted RBP13.13□□□□□ -0.31
CLK3-216ENST00000564468 PHF2O75151 1096 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 AP2A2O94973 939 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 BRAFP15056 766 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 AMD1P17707 334 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 CSTF2P33240 577 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-216ENST00000564468 GRIA1P42261 906 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 NSG1P42857 185 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 FNTAP49354 379 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 SESN2P58004 480 aaPredicted RBP13.13□□□□□ -0.31
CLK3-216ENST00000564468 ACVR1Q04771 509 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 CCDC173Q0VFZ6 552 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 GPS1Q13098 491 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 NFE2L1Q14494 772 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 AARS2Q5JTZ9 985 aaKnown RBP13.13□□□□□ -0.31
CLK3-216ENST00000564468 TMEM164Q5U3C3 297 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 LRRC8BQ6P9F7 803 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 KLHL35Q6PF15 583 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 CLEC14AQ86T13 490 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 ZNF761Q86XN6 746 aaPredicted RBP13.13□□□□□ -0.31
CLK3-216ENST00000564468 LSM14AQ8ND56 463 aaKnown RBP13.13□□□□□ -0.31
CLK3-216ENST00000564468 OR6P1Q8NGX9 317 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 OR4L1Q8NH43 312 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 COG1Q8WTW3 980 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 ZFPM2Q8WW38 1151 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 SLC39A7Q92504 469 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 HDAC10Q969S8 669 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 PRR11Q96HE9 360 aaPredicted RBP13.13□□□□□ -0.31
CLK3-216ENST00000564468 SGSM3Q96HU1 749 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 DCBLD2Q96PD2 775 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 B3GNT4Q9C0J1 378 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 SLC40A1Q9NP59 571 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 PCDHGA7Q9Y5G6 932 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 HEBP2Q9Y5Z4 205 aa13.13□□□□□ -0.31
CLK3-216ENST00000564468 A0A1W2PNU3 283 aaPredicted RBP13.12□□□□□ -0.31
CLK3-216ENST00000564468 CCDC78A2IDD5 438 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 CCDC162PA2VCL2 907 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 OR52A4PA6NMU1 304 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 CDRT15L2A8MXV6 281 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 UBXN7O94888 489 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 ZIC2O95409 532 aaPredicted RBP13.12□□□□□ -0.31
CLK3-216ENST00000564468 FTH1P02794 183 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 SLC35G4P0C7Q5 338 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 THRAP10827 490 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 NDUFS1P28331 727 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 FOXN2P32314 431 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 MAPK9P45984 424 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 CDKN1CP49918 316 aaPredicted RBP13.12□□□□□ -0.31
CLK3-216ENST00000564468 ARSDP51689 593 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 GNG11P61952 73 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 CLCA4Q14CN2 919 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 TRIP13Q15645 432 aaPredicted RBP13.12□□□□□ -0.31
CLK3-216ENST00000564468 DBN1Q16643 649 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 FASTKD1Q53R41 847 aaKnown RBP13.12□□□□□ -0.31
CLK3-216ENST00000564468 TTC27Q6P3X3 843 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 PACS1Q6VY07 963 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 ZNF574Q6ZN55 896 aaPredicted RBP13.12□□□□□ -0.31
CLK3-216ENST00000564468 TMPRSS9Q7Z410 1059 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 CFAP206Q8IYR0 622 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 AGBL5Q8NDL9 886 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 OR13J1Q8NGT2 312 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 CCDC74BQ96LY2 380 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 TBC1D10AQ9BXI6 508 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 DPH1Q9BZG8 443 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 MRM3Q9HC36 420 aaKnown RBP13.12□□□□□ -0.31
CLK3-216ENST00000564468 SMARCAL1Q9NZC9 954 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 PDP2Q9P2J9 529 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 PISDQ9UG56 409 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 COLEC10Q9Y6Z7 277 aa13.12□□□□□ -0.31
CLK3-216ENST00000564468 MAST4O15021 2626 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 IFRD1O00458 451 aaPredicted RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 NVLO15381 856 aaKnown RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 SGTAO43765 313 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 GOT2P00505 430 aaKnown RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 OR56A5P0C7T3 313 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 MTHFD1P11586 935 aaKnown RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 CSF2RBP32927 897 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 MAGEA6P43360 314 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 VPS41P49754 854 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 PLOD1Q02809 727 aaPredicted RBP13.11□□□□□ -0.31
CLK3-216ENST00000564468 CFHR1Q03591 330 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 RPA4Q13156 261 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 GPR18Q14330 331 aa13.11□□□□□ -0.31
CLK3-216ENST00000564468 KRT33BQ14525 404 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms