RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 FNTAP49354 379 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 SESN2P58004 480 aaPredicted RBP13.13□□□□□ -0.31
CLK3-213ENST00000563842 ACVR1Q04771 509 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 CCDC173Q0VFZ6 552 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 GPS1Q13098 491 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 NFE2L1Q14494 772 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 AARS2Q5JTZ9 985 aaKnown RBP13.13□□□□□ -0.31
CLK3-213ENST00000563842 TMEM164Q5U3C3 297 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 LRRC8BQ6P9F7 803 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 KLHL35Q6PF15 583 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 CLEC14AQ86T13 490 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 ZNF761Q86XN6 746 aaPredicted RBP13.13□□□□□ -0.31
CLK3-213ENST00000563842 OR6P1Q8NGX9 317 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 OR4L1Q8NH43 312 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 COG1Q8WTW3 980 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 ZFPM2Q8WW38 1151 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 HDAC10Q969S8 669 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 PRR11Q96HE9 360 aaPredicted RBP13.13□□□□□ -0.31
CLK3-213ENST00000563842 SGSM3Q96HU1 749 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 DCBLD2Q96PD2 775 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 B3GNT4Q9C0J1 378 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 SLC40A1Q9NP59 571 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 PCDHGA7Q9Y5G6 932 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 HEBP2Q9Y5Z4 205 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 BPTFQ12830 3046 aa13.13□□□□□ -0.31
CLK3-213ENST00000563842 ASH1LQ9NR48 2969 aaKnown RBP13.12□□□□□ -0.31
CLK3-213ENST00000563842 A0A1W2PNU3 283 aaPredicted RBP13.12□□□□□ -0.31
CLK3-213ENST00000563842 CCDC78A2IDD5 438 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 CCDC162PA2VCL2 907 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 OR52A4PA6NMU1 304 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 CDRT15L2A8MXV6 281 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 UBXN7O94888 489 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 FTH1P02794 183 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 SLC35G4P0C7Q5 338 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 THRAP10827 490 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 NDUFS1P28331 727 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 FOXN2P32314 431 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 ABCG1P45844 678 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 MAPK9P45984 424 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 CDKN1CP49918 316 aaPredicted RBP13.12□□□□□ -0.31
CLK3-213ENST00000563842 ARSDP51689 593 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 GNG11P61952 73 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 CLCA4Q14CN2 919 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 TRIP13Q15645 432 aaPredicted RBP13.12□□□□□ -0.31
CLK3-213ENST00000563842 DBN1Q16643 649 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 FASTKD1Q53R41 847 aaKnown RBP13.12□□□□□ -0.31
CLK3-213ENST00000563842 TTC27Q6P3X3 843 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 PACS1Q6VY07 963 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 ZNF574Q6ZN55 896 aaPredicted RBP13.12□□□□□ -0.31
CLK3-213ENST00000563842 TMPRSS9Q7Z410 1059 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 CFAP206Q8IYR0 622 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 AGBL5Q8NDL9 886 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 OR13J1Q8NGT2 312 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 CCDC74BQ96LY2 380 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 TBC1D10AQ9BXI6 508 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 DPH1Q9BZG8 443 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 MRM3Q9HC36 420 aaKnown RBP13.12□□□□□ -0.31
CLK3-213ENST00000563842 SMARCAL1Q9NZC9 954 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 PDP2Q9P2J9 529 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 PISDQ9UG56 409 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 COLEC10Q9Y6Z7 277 aa13.12□□□□□ -0.31
CLK3-213ENST00000563842 WDFY3Q8IZQ1 3526 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 IFRD1O00458 451 aaPredicted RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 NVLO15381 856 aaKnown RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 SGTAO43765 313 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 GOT2P00505 430 aaKnown RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 OR56A5P0C7T3 313 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 MTHFD1P11586 935 aaKnown RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 CSF2RBP32927 897 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 MAGEA6P43360 314 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 VPS41P49754 854 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 PLOD1Q02809 727 aaPredicted RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 CFHR1Q03591 330 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 RPA4Q13156 261 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 GPR18Q14330 331 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 KRT33BQ14525 404 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 C16orf72Q14CZ0 275 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 RPE65Q16518 533 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 BROXQ5VW32 411 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 FAM83HQ6ZRV2 1179 aaPredicted RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 JAMLQ86YT9 394 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 PIANPQ8IYJ0 282 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 KCNE4Q8WWG9 221 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 C12orf66Q96MD2 445 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 NAPGQ99747 312 aaPredicted RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 TSSK1BQ9BXA7 367 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 WWP1Q9H0M0 922 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 CHRAC1Q9NRG0 131 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 IMP3Q9NV31 184 aaKnown RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.11□□□□□ -0.31
CLK3-213ENST00000563842 PSMD13Q9UNM6 376 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 WDR37Q9Y2I8 494 aa13.11□□□□□ -0.31
CLK3-213ENST00000563842 PTPRQQ9UMZ3 2332 aa13.1□□□□□ -0.31
CLK3-213ENST00000563842 MAGEB16A2A368 324 aa13.1□□□□□ -0.31
CLK3-213ENST00000563842 CTAGE9A4FU28 777 aa13.1□□□□□ -0.31
CLK3-213ENST00000563842 OR51F1A6NGY5 319 aa13.1□□□□□ -0.31
CLK3-213ENST00000563842 USP27XA6NNY8 438 aa13.1□□□□□ -0.31
CLK3-213ENST00000563842 LIN7AO14910 233 aaPredicted RBP13.1□□□□□ -0.31
CLK3-213ENST00000563842 PFDN6O15212 129 aa13.1□□□□□ -0.31
CLK3-213ENST00000563842 ZNF185O15231 689 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms