RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 HM13Q8TCT9 377 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 ZDHHC1Q8WTX9 485 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 APOLD1Q96LR9 279 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 CCM2Q9BSQ5 444 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 DUSP23Q9BVJ7 150 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 TXLNGYQ9BZA5 131 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 COG4Q9H9E3 785 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 SCHIP1Q9P0W5 487 aaPredicted RBP21.38■■□□□ 1.01
SNX1-210ENST00000560260 GNPTGQ9UJJ9 305 aa21.38■■□□□ 1.01
SNX1-210ENST00000560260 FAM159BA6NKW6 160 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 QSOX1O00391 747 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 ADARP55265 1226 aaKnown RBP21.37■■□□□ 1.01
SNX1-210ENST00000560260 MAZP56270 477 aaKnown RBP21.37■■□□□ 1.01
SNX1-210ENST00000560260 EFTUD2Q15029 972 aaKnown RBP eCLIP21.37■■□□□ 1.017e-14■■■■■ 31
SNX1-210ENST00000560260 SEPT7Q16181 437 aaKnown RBP21.37■■□□□ 1.01
SNX1-210ENST00000560260 KIAA0408Q6ZU52 694 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 LRRC6Q86X45 466 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 EIF1ADQ8N9N8 165 aaKnown RBP21.37■■□□□ 1.01
SNX1-210ENST00000560260 GPR156Q8NFN8 814 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 FBF1Q8TES7 1133 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 CNDP2Q96KP4 475 aaKnown RBP21.37■■□□□ 1.01
SNX1-210ENST00000560260 DPEP2Q9H4A9 486 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 VPS37BQ9H9H4 285 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 ZFATQ9P243 1243 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 WDR37Q9Y2I8 494 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 MED16Q9Y2X0 877 aa21.37■■□□□ 1.01
SNX1-210ENST00000560260 AHSGP02765 367 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 FTH1P02794 183 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 ESR1P03372 595 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 PKMP14618 531 aaKnown RBP21.36■■□□□ 1.01
SNX1-210ENST00000560260 RPL10P27635 214 aaKnown RBP21.36■■□□□ 1.01
SNX1-210ENST00000560260 CCR7P32248 378 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 DNAJC3Q13217 504 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 RBM20Q5T481 1227 aaKnown RBP21.36■■□□□ 1.01
SNX1-210ENST00000560260 PTRHD1Q6GMV3 140 aaKnown RBP21.36■■□□□ 1.01
SNX1-210ENST00000560260 CEP128Q6ZU80 1094 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 CYS1Q717R9 158 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 GALNT7Q86SF2 657 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 C17orf82Q86X59 251 aaPredicted RBP21.36■■□□□ 1.01
SNX1-210ENST00000560260 ARL10Q8N8L6 244 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 UBXN4Q92575 508 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 TSPYL1Q9H0U9 437 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 GALPQ9UBC7 116 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 FTSJ1Q9UET6 329 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 PCDHB1Q9Y5F3 818 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 DCHS1Q96JQ0 3298 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 SPEGQ15772 3267 aa21.36■■□□□ 1.01
SNX1-210ENST00000560260 C17orf113A0A1B0GUU1 675 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 GIPC1O14908 333 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 PFDN6O15212 129 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 KCNJ13O60928 360 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 TRIM16O95361 564 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 ACSL3O95573 720 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 LDOC1O95751 146 aaPredicted RBP21.35■■□□□ 1.01
SNX1-210ENST00000560260 VCLP18206 1134 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 CSRP1P21291 193 aaKnown RBP21.35■■□□□ 1.01
SNX1-210ENST00000560260 PREPP48147 710 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 TUBB4BP68371 445 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 METRNLQ641Q3 311 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 ZNF449Q6P9G9 518 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 CCNI2Q6ZMN8 369 aaPredicted RBP21.35■■□□□ 1.01
SNX1-210ENST00000560260 CFAP206Q8IYR0 622 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 SLC37A2Q8TED4 501 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 ELMO1Q92556 727 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 FAM136AQ96C01 138 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 NDNQ99608 321 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 MCMBPQ9BTE3 642 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 DLL3Q9NYJ7 618 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 PSMD13Q9UNM6 376 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 VPS9D1Q9Y2B5 631 aa21.35■■□□□ 1.01
SNX1-210ENST00000560260 TRBV23OR9-2A0A075B6M9 112 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 SLC5A10A0PJK1 596 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 PDZK1P1A8MUH7 402 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 SPAG6O75602 509 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 F3P13726 295 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 IDSP22304 550 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 PDHA2P29803 388 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 CD151P48509 253 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 TIAL1Q01085 375 aaKnown RBP eCLIP21.34■■□□□ 1.01
SNX1-210ENST00000560260 BOP1Q14137 746 aaKnown RBP21.34■■□□□ 1.01
SNX1-210ENST00000560260 CLCA4Q14CN2 919 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 KBTBD12Q3ZCT8 623 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 C14orf28Q4W4Y0 310 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 AGAP9Q5VTM2 703 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 IYDQ6PHW0 289 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 SPDYE1Q8NFV5 336 aaPredicted RBP21.34■■□□□ 1.01
SNX1-210ENST00000560260 GIMAP7Q8NHV1 300 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 RMDN2Q96LZ7 410 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 SLC30A3Q99726 388 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 AARSD1Q9BTE6 412 aaKnown RBP21.34■■□□□ 1.01
SNX1-210ENST00000560260 FUT8Q9BYC5 575 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 OR52A5Q9H2C5 316 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 EPB41L4BQ9H329 900 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 TOR4AQ9NXH8 423 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 CDYLQ9Y232 598 aa21.34■■□□□ 1.01
SNX1-210ENST00000560260 OR52A4PA6NMU1 304 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 GSTM1P09488 218 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 AOAHP28039 575 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 STX2P32856 288 aa21.33■■□□□ 1.01
SNX1-210ENST00000560260 CSE1LP55060 971 aaKnown RBP21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms