RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 TSPAN17Q96FV3 270 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 PRR11Q96HE9 360 aaPredicted RBP7.3□□□□□ -1.24
SPG11-213ENST00000558988 TBATAQ96M53 351 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 ZNF599Q96NL3 588 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 SLC46A1Q96NT5 459 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 NUDCD1Q96RS6 583 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 MGME1Q9BQP7 344 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 GORASP1Q9BQQ3 440 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 FUCA2Q9BTY2 467 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 PACSIN1Q9BY11 444 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 STRADBQ9C0K7 418 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.3□□□□□ -1.24
SPG11-213ENST00000558988 LRRN3Q9H3W5 708 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 RDH14Q9HBH5 336 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 PHPT1Q9NRX4 125 aaPredicted RBP7.3□□□□□ -1.24
SPG11-213ENST00000558988 LRIT1Q9P2V4 623 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 CHKBQ9Y259 395 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 TMEM98Q9Y2Y6 226 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 BZW2Q9Y6E2 419 aaKnown RBP7.3□□□□□ -1.24
SPG11-213ENST00000558988 RNF215Q9Y6U7 377 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 ATRXP46100 2492 aa7.3□□□□□ -1.24
SPG11-213ENST00000558988 PTPRQQ9UMZ3 2332 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 A0A1W2PQM1 296 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 PLD2O14939 933 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 SOCS5O75159 536 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 PPFIA2O75334 1257 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 TCEA3O75764 348 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 PGLSO95336 258 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 PEX11BO96011 259 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 GYPCP04921 128 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 CYP1A2P05177 515 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 PDHA1P08559 390 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 MYCLP1P12525 358 aaPredicted RBP7.29□□□□□ -1.24
SPG11-213ENST00000558988 GM2AP17900 193 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 ITIH1P19827 911 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 UGT1A5P35504 534 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 HSPA9P38646 679 aaKnown RBP7.29□□□□□ -1.24
SPG11-213ENST00000558988 GPR1P46091 355 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 TAS2R40P59535 323 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 ERVPABLB-1P60509 514 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 CDK3Q00526 305 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 NSUN2Q08J23 767 aaKnown RBP eCLIP7.29□□□□□ -1.24
SPG11-213ENST00000558988 ILF3Q12906 894 aaKnown RBP eCLIP7.29□□□□□ -1.24
SPG11-213ENST00000558988 DPYSL3Q14195 570 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 MESDQ14696 234 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 KRTAP15-1Q3LI76 137 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 C14orf28Q4W4Y0 310 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 CERCAMQ5T4B2 595 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 KIAA1614Q5VZ46 1190 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 LRRC66Q68CR7 880 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 LVRNQ6Q4G3 990 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 CCDC81Q6ZN84 652 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 USP53Q70EK8 1073 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 KDELC2Q7Z4H8 507 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 CCNYQ8ND76 341 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 LPCAT1Q8NF37 534 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 KIAA1524Q8TCG1 905 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 TEKT4Q8WW24 435 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 PATE1Q8WXA2 126 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 JPH3Q8WXH2 748 aaPredicted RBP7.29□□□□□ -1.24
SPG11-213ENST00000558988 CTNNBL1Q8WYA6 563 aaPredicted RBP7.29□□□□□ -1.24
SPG11-213ENST00000558988 SCAMP4Q969E2 229 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 AP2M1Q96CW1 435 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 DTD2Q96FN9 168 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 HIC2Q96JB3 615 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 COQ10AQ96MF6 247 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 GSDMCQ9BYG8 508 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 XPO4Q9C0E2 1151 aaKnown RBP7.29□□□□□ -1.24
SPG11-213ENST00000558988 SPATS2LQ9NUQ6 558 aaKnown RBP7.29□□□□□ -1.24
SPG11-213ENST00000558988 RBM22Q9NW64 420 aaKnown RBP eCLIP7.29□□□□□ -1.24
SPG11-213ENST00000558988 GFOD1Q9NXC2 390 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 SEPT10Q9P0V9 454 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 CAPN11Q9UMQ6 739 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 PHTF1Q9UMS5 762 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 SUFUQ9UMX1 484 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 POLR3KQ9Y2Y1 108 aaPredicted RBP7.29□□□□□ -1.24
SPG11-213ENST00000558988 PRKAB1Q9Y478 270 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 PLEKHM1Q9Y4G2 1056 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 LOXL2Q9Y4K0 774 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 DGKBQ9Y6T7 804 aa7.29□□□□□ -1.24
SPG11-213ENST00000558988 UNC13CQ8NB66 2214 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 COL27A1Q8IZC6 1860 aaPredicted RBP7.28□□□□□ -1.24
SPG11-213ENST00000558988 FAM221AA4D161 298 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 LRRD1A4D1F6 860 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 NTN3O00634 580 aaPredicted RBP7.28□□□□□ -1.24
SPG11-213ENST00000558988 TNFRSF10CO14798 259 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 HTRA2O43464 458 aaPredicted RBP7.28□□□□□ -1.24
SPG11-213ENST00000558988 AKR1B10O60218 316 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 ASMTLO95671 621 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 HLA-DQB2P05538 268 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 TPM3P06753 285 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 CCNB1P14635 433 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 CR2P20023 1033 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 SLC5A2P31639 672 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 PBX1P40424 430 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 GARSP41250 739 aaKnown RBP7.28□□□□□ -1.24
SPG11-213ENST00000558988 ACTR1BP42025 376 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 MAPK9P45984 424 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 UCNP55089 124 aa7.28□□□□□ -1.24
SPG11-213ENST00000558988 OR1D5P58170 312 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms