RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 EIF1BO60739 113 aaKnown RBP13.64□□□□□ -0.23
SHMT2-226ENST00000556825 HUS1O60921 280 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 PMPCBO75439 489 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 RHOBTB1O94844 696 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 NTSR2O95665 410 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 TFEBP19484 476 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 RPS3P23396 243 aaKnown RBP eCLIP13.64□□□□□ -0.234e-7■■■□□ 17.6
SHMT2-226ENST00000556825 IL1R2P27930 398 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 EIF1P41567 113 aaKnown RBP13.64□□□□□ -0.23
SHMT2-226ENST00000556825 STARP49675 285 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 CLCNKAP51800 687 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 SNX16P57768 344 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 KCNK10P57789 538 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 MAMLD1Q13495 774 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 ARMCX4Q5H9R4 360 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 TRILQ7L0X0 811 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 SYVN1Q86TM6 617 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 ZNF555Q8NEP9 628 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 ISL2Q96A47 359 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 FEM1AQ9BSK4 669 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 RNF121Q9H920 327 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 MKNK2Q9HBH9 465 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 MRPL47Q9HD33 250 aaKnown RBP13.64□□□□□ -0.23
SHMT2-226ENST00000556825 PRDM9Q9NQV7 894 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 RBAKQ9NYW8 714 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-226ENST00000556825 ERVK-18Q9QC07 812 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 CTSFQ9UBX1 484 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 SLC22A7Q9Y694 548 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 B4DXG7 233 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 TRIM13O60858 407 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 RAF1P04049 648 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 ALPLP05186 524 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 TIE1P35590 1138 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 KCNC1P48547 511 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 PITRM1Q5JRX3 1037 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 KDM4DQ6B0I6 523 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 TRMT10BQ6PF06 316 aaKnown RBP13.64□□□□□ -0.23
SHMT2-226ENST00000556825 PAMR1Q6UXH9 720 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 ADGRA1Q86SQ6 560 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 TBC1D19Q8N5T2 526 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 CPA5Q8WXQ8 436 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 TTYH1Q9H313 450 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-226ENST00000556825 RDH8Q9NYR8 311 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 USE1Q9NZ43 259 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 PLCL2Q9UPR0 1127 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 ENTPD4Q9Y227 616 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 NDUFAF1Q9Y375 327 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 KCNMB2Q9Y691 235 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 DICER1Q9UPY3 1922 aaKnown RBP13.64□□□□□ -0.23
SHMT2-226ENST00000556825 CNTNAP4Q9C0A0 1308 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 PGLSO95336 258 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 PAPSS2O95340 614 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-226ENST00000556825 HPRP00739 348 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 TPOP07202 933 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 CPN2P22792 545 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 POU1F1P28069 291 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 HK3P52790 923 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 CDH8P55286 799 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 EPS8Q12929 822 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 GRAPQ13588 217 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 CYP27C1Q4G0S4 372 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 FBXO33Q7Z6M2 555 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 SLC5A11Q8WWX8 675 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 ASB15Q8WXK1 588 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 GJD4Q96KN9 370 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-226ENST00000556825 SLC30A2Q9BRI3 323 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 PAK6Q9NQU5 681 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-226ENST00000556825 AGPAT3Q9NRZ7 376 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 LRP2BPQ9P2M1 347 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 SAE1Q9UBE0 346 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-226ENST00000556825 SEPT9Q9UHD8 586 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-226ENST00000556825 THSD7AQ9UPZ6 1657 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 DBX1A6NMT0 343 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 WDR64B1ANS9 1081 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 USP17L12C9JPN9 530 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 USP17L21D6R901 530 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 INPPL1O15357 1258 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 KCNN4O15554 427 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 AIREO43918 545 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 TGM6O95932 706 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 IFNA7P01567 189 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 HBQ1P09105 142 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 HSD17B1P14061 328 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 BCAMP50895 628 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 ISL1P61371 349 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 MVKQ03426 396 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 HYAL2Q12891 473 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 MAB21L1Q13394 359 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 STXBP2Q15833 593 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 CYP51A1Q16850 503 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 POTEGQ6S5H5 508 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 KDELC1Q6UW63 502 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 LAYNQ6UX15 382 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 USP45Q70EL2 814 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 ANKRD52Q8NB46 1076 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 OR6S1Q8NH40 331 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 TRMT2BQ96GJ1 504 aaKnown RBP13.63□□□□□ -0.23
SHMT2-226ENST00000556825 TMEM68Q96MH6 324 aa13.63□□□□□ -0.23
SHMT2-226ENST00000556825 QKIQ96PU8 341 aaKnown RBP eCLIP13.63□□□□□ -0.23
SHMT2-226ENST00000556825 FAM129BQ96TA1 746 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms