RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 DLG5Q8TDM6 1919 aa4.76□□□□□ -1.65
PRPF39-209ENST00000556353 KDM6AO15550 1401 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-209ENST00000556353 BLOC1S5-TXNDC5H3BN57 136 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 ALDH4A1P30038 563 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 EIF3BP55884 814 aaKnown RBP4.75□□□□□ -1.65
PRPF39-209ENST00000556353 RPL24P83731 157 aaKnown RBP4.75□□□□□ -1.65
PRPF39-209ENST00000556353 PTP4A2Q12974 167 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 MAD2L1Q13257 205 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-209ENST00000556353 BIRC3Q13489 604 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 ARHGAP17Q68EM7 881 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 TMED8Q6PL24 325 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-209ENST00000556353 ATF7IPQ6VMQ6 1270 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 RAD9BQ6WBX8 426 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 SMIM5Q71RC9 77 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 GSTA5Q7RTV2 222 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 DGLUCYQ7Z3D6 616 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 NRROSQ86YC3 692 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 NFKBIDQ8NI38 313 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 TM9SF4Q92544 642 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 HTRA1Q92743 480 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 GTF3C6Q969F1 213 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 STAMBPL1Q96FJ0 436 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 EGLN1Q9GZT9 426 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 SLC25A18Q9H1K4 315 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 TFB2MQ9H5Q4 396 aaKnown RBP4.75□□□□□ -1.65
PRPF39-209ENST00000556353 SLC28A3Q9HAS3 691 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 LTB4R2Q9NPC1 389 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.75□□□□□ -1.65
PRPF39-209ENST00000556353 KIF24Q5T7B8 1368 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 NRXN2Q9P2S2 1712 aa4.75□□□□□ -1.65
PRPF39-209ENST00000556353 BCORQ6W2J9 1755 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 A0A0U1RQG5 324 aaPredicted RBP4.74□□□□□ -1.65
PRPF39-209ENST00000556353 RRN3P2A6NIE6 340 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 EIF3DO15371 548 aaKnown RBP eCLIP4.74□□□□□ -1.65
PRPF39-209ENST00000556353 TNFSF14O43557 240 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 PRKNO60260 465 aaPredicted RBP4.74□□□□□ -1.65
PRPF39-209ENST00000556353 ZNF883P0CG24 379 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 ZNF182P17025 639 aaPredicted RBP4.74□□□□□ -1.65
PRPF39-209ENST00000556353 ZNF23P17027 643 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 NR1D1P20393 614 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 DCTP40126 519 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 UBA7P41226 1012 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 IRX6P78412 446 aaPredicted RBP4.74□□□□□ -1.65
PRPF39-209ENST00000556353 GLIPR1L2Q4G1C9 344 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 C18orf63Q68DL7 685 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 PLEKHM3Q6ZWE6 761 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 SRBD1Q8N5C6 995 aaKnown RBP4.74□□□□□ -1.65
PRPF39-209ENST00000556353 ZNF485Q8NCK3 441 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 ZNF248Q8NDW4 579 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 DNAAF4Q8WXU2 420 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 TAF15Q92804 592 aaKnown RBP eCLIP4.74□□□□□ -1.65
PRPF39-209ENST00000556353 USP44Q9H0E7 712 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 CAMK2AQ9UQM7 478 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 ADCY9O60503 1353 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 PALLDQ8WX93 1383 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 TIAM2Q8IVF5 1701 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 MRC1P22897 1456 aa4.74□□□□□ -1.65
PRPF39-209ENST00000556353 DICER1Q9UPY3 1922 aaKnown RBP4.74□□□□□ -1.65
PRPF39-209ENST00000556353 SCN7AQ01118 1682 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 PCDH11XQ9BZA7 1347 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 PCDH11YQ9BZA8 1340 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 SMIM1B2RUZ4 78 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 NCAM2O15394 837 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 CAVIN2O95810 425 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 F9P00740 461 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 PATE4P0C8F1 98 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 AHRP35869 848 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 PIP4K2AP48426 406 aaPredicted RBP4.73□□□□□ -1.65
PRPF39-209ENST00000556353 TAF6P49848 677 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 TMF1P82094 1093 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 DCTN2Q13561 401 aaKnown RBP4.73□□□□□ -1.65
PRPF39-209ENST00000556353 ITPK1Q13572 414 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 STPG4Q8N801 248 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 PPP1R13BQ96KQ4 1090 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 TMEM68Q96MH6 324 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 RANBP17Q9H2T7 1088 aaKnown RBP4.73□□□□□ -1.65
PRPF39-209ENST00000556353 MARCH4Q9P2E8 410 aaPredicted RBP4.73□□□□□ -1.65
PRPF39-209ENST00000556353 ZNF624Q9P2J8 865 aaPredicted RBP4.73□□□□□ -1.65
PRPF39-209ENST00000556353 INTS6Q9UL03 887 aaKnown RBP4.73□□□□□ -1.65
PRPF39-209ENST00000556353 MMP24Q9Y5R2 645 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 CYP46A1Q9Y6A2 500 aa4.73□□□□□ -1.65
PRPF39-209ENST00000556353 KCPQ6ZWJ8 1503 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 IGKV3D-15A0A087WSY6 115 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 FAM237AA0A1B0GTK4 181 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 A0A1B0GU03 582 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 M0QZ24 198 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 KCNN4O15554 427 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 CTSVO60911 334 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 IL7RP16871 459 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 XBP1P17861 261 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 UBA1P22314 1058 aaKnown RBP4.72□□□□□ -1.65
PRPF39-209ENST00000556353 ABCD3P28288 659 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 APOBEC1P41238 236 aaKnown RBP4.72□□□□□ -1.65
PRPF39-209ENST00000556353 MAPK9P45984 424 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 ARCN1P48444 511 aaKnown RBP4.72□□□□□ -1.65
PRPF39-209ENST00000556353 PPM1FP49593 454 aaPredicted RBP4.72□□□□□ -1.65
PRPF39-209ENST00000556353 CLDN20P56880 219 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 COG7P83436 770 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 OLIG2Q13516 323 aa4.72□□□□□ -1.65
PRPF39-209ENST00000556353 WDR38Q5JTN6 314 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms