RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 PEX13Q92968 403 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 CXorf40BQ96DE9 158 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 ZNF578Q96N58 590 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-219ENST00000555563 SLC46A1Q96NT5 459 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 DPYSL5Q9BPU6 564 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-219ENST00000555563 IL22Q9GZX6 179 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 UCK1Q9HA47 277 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 CHRAC1Q9NRG0 131 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 THSD1Q9NS62 852 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 PISDQ9UG56 409 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.45□□□□□ -0.264e-7■■□□□ 12.3
SHMT2-219ENST00000555563 ATRXP46100 2492 aa13.45□□□□□ -0.26
SHMT2-219ENST00000555563 FREM2Q5SZK8 3169 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 A0A087WV48 116 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 KLHL33A6NCF5 533 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 CDRT15L2A8MXV6 281 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 FANCGO15287 622 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 ITGA2BP08514 1039 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 ITIH1P19827 911 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 MGAT1P26572 445 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 MLLT3P42568 568 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-219ENST00000555563 LIMK2P53671 638 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 PRAMEP78395 509 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 GPR18Q14330 331 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 ITIH4Q14624 930 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 RPE65Q16518 533 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 PCID2Q5JVF3 399 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 DUS1LQ6P1R4 473 aaKnown RBP13.44□□□□□ -0.26
SHMT2-219ENST00000555563 TMEM71Q6P5X7 295 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 LRRC8BQ6P9F7 803 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 PACS1Q6VY07 963 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 SPDYE1Q8NFV5 336 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-219ENST00000555563 OR6P1Q8NGX9 317 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 CPT1BQ92523 772 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.44□□□□□ -0.26
SHMT2-219ENST00000555563 TMEM159Q96B96 161 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 RMDN2Q96LZ7 410 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 NAPGQ99747 312 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-219ENST00000555563 CMKLR1Q99788 373 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 WWP1Q9H0M0 922 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 SLC40A1Q9NP59 571 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 TREX1Q9NSU2 369 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 IMP3Q9NV31 184 aaKnown RBP13.44□□□□□ -0.26
SHMT2-219ENST00000555563 SYBUQ9NX95 663 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 BFARQ9NZS9 450 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 OGFRQ9NZT2 677 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 BAHCC1Q9P281 2608 aa13.44□□□□□ -0.26
SHMT2-219ENST00000555563 BPTFQ12830 3046 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 AP3B1O00203 1094 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 HGSO14964 777 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 SLC35G4P0C7Q5 338 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 JMJD7P0C870 316 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 MTHFD1P11586 935 aaKnown RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 NMBRP28336 390 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 EIF2S3P41091 472 aaKnown RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 ETV5P41161 510 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 NSG1P42857 185 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 PCBP4P57723 403 aaKnown RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 TRA2AQ13595 282 aaKnown RBP eCLIP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 SEMA3AQ14563 771 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 ZNF658BQ4V348 819 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 PAPD7Q5XG87 772 aaKnown RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 WDR74Q6RFH5 385 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 CLEC14AQ86T13 490 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 C17orf53Q8N3J3 647 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 GRK7Q8WTQ7 553 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 NCSTNQ92542 709 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 CAPZA3Q96KX2 299 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 DDX47Q9H0S4 455 aaKnown RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 EPB41L1Q9H4G0 881 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 COG4Q9H9E3 785 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 VPS37BQ9H9H4 285 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 ACSL5Q9ULC5 683 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 CFAP20Q9Y6A4 193 aaKnown RBP13.43□□□□□ -0.26
SHMT2-219ENST00000555563 PRSS21Q9Y6M0 314 aa13.43□□□□□ -0.26
SHMT2-219ENST00000555563 ACACAQ13085 2346 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 MN1Q10571 1320 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-219ENST00000555563 CTAGE9A4FU28 777 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 OR1I1O60431 355 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 AVILO75366 819 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 UBXN7O94888 489 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 AP2A2O94973 939 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 POLBP06746 335 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 TYRP1P17643 537 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 NPY2RP49146 381 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 GFERP55789 205 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 SNAP47Q5SQN1 464 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 CAND1Q86VP6 1230 aaKnown RBP13.42□□□□□ -0.26
SHMT2-219ENST00000555563 JAMLQ86YT9 394 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 RBM12BQ8IXT5 1001 aaKnown RBP13.42□□□□□ -0.26
SHMT2-219ENST00000555563 CFAP206Q8IYR0 622 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 MPP5Q8N3R9 675 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 OR4L1Q8NH43 312 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 JPH3Q8WXH2 748 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-219ENST00000555563 RSC1A1Q92681 617 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 NAF1Q96HR8 494 aaKnown RBP13.42□□□□□ -0.26
SHMT2-219ENST00000555563 SGSM3Q96HU1 749 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 C12orf66Q96MD2 445 aa13.42□□□□□ -0.26
SHMT2-219ENST00000555563 INSM2Q96T92 566 aaPredicted RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms