RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SULT1C3Q6IMI6 304 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 PARS2Q7L3T8 475 aaKnown RBP25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 DDIASQ8IXT1 998 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 NRSN1Q8IZ57 195 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 CHCHD4Q8N4Q1 142 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 CPA6Q8N4T0 437 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 UBTD2Q8WUN7 234 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 CCT7Q99832 543 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 NOP53Q9NZM5 478 aaKnown RBP25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 NKX1-2Q9UD57 310 aaPredicted RBP25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 ZNF225Q9UK10 706 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 ADAMTS6Q9UKP5 1117 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 PLXNA2O75051 1894 aa25.91■■□□□ 1.74
CCDC88C-205ENST00000553403 A0A1B0GTL3 188 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 KPNA5O15131 536 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 CCR7P32248 378 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 ETV3P41162 512 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 TBL3Q12788 808 aaKnown RBP25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 FASTKQ14296 549 aaKnown RBP25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 ZNF284Q2VY69 593 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 C9orf64Q5T6V5 341 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 VITQ6UXI7 678 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 LIPIQ6XZB0 460 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 PHYKPLQ8IUZ5 450 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 DDHD1Q8NEL9 900 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 SCAMP4Q969E2 229 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 RCN3Q96D15 328 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 GUCD1Q96NT3 240 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 APOL5Q9BWW9 433 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 CDH22Q9UJ99 828 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 ASB1Q9Y576 335 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 LBPP18428 481 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 AKT1P31749 480 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 ACADVLP49748 655 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 ACTR3P61158 418 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 STX1BP61266 288 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 PLEKHS1Q5SXH7 462 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 ANKRD54Q6NXT1 300 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 RIPOR1Q6ZS17 1223 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 DSELQ8IZU8 1212 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 TERB1Q8NA31 727 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 STMN2Q93045 179 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 ESAMQ96AP7 390 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 VPS35Q96QK1 796 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 RIOK2Q9BVS4 552 aaKnown RBP25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 SLC28A3Q9HAS3 691 aa25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 MUC22E2RYF6 1773 aaPredicted RBP25.9■■□□□ 1.74
CCDC88C-205ENST00000553403 ATP6AP2A0A1C7CYW4 349 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 KPNA3O00505 521 aaPredicted RBP25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 ATP6AP2O75787 350 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 PSMG1O95456 288 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 MPC1LP0DKB6 136 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 ITGB7P26010 798 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 PRDX3P30048 256 aaKnown RBP25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 FCHO2Q0JRZ9 810 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 STX5Q13190 355 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 GOLGA7Q7Z5G4 137 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 HMGCLL1Q8TB92 370 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 UCMAQ8WVF2 138 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 ABCG8Q9H221 673 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 PPM1HQ9ULR3 514 aa25.89■■□□□ 1.73
CCDC88C-205ENST00000553403 H0Y858 1186 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 QSOX1O00391 747 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 TAPBPO15533 448 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 NUAK1O60285 661 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 ELFN1P0C7U0 828 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 GTF2H2Q13888 395 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 AGKQ53H12 422 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 C1orf146Q5VVC0 180 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 FAM219BQ5XKK7 198 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 GTF2H2CQ6P1K8 395 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 TTC23LQ6PF05 361 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 SYCE2Q6PIF2 218 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 PGAM4Q8N0Y7 254 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 FBXW8Q8N3Y1 598 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 CDX2Q99626 313 aaPredicted RBP25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 TTYH1Q9H313 450 aaPredicted RBP25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 TMEM245Q9H330 911 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 NSUN3Q9H649 340 aaKnown RBP25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 POLG2Q9UHN1 485 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 SARDHQ9UL12 918 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 TIMM22Q9Y584 194 aa25.88■■□□□ 1.73
CCDC88C-205ENST00000553403 ENO2P09104 434 aaPredicted RBP25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 ALDOCP09972 364 aaKnown RBP25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 LINC00032P0C843 101 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 MSH3P20585 1137 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 ART3Q13508 389 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 RUNX3Q13761 415 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 ZNF234Q14588 700 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 E2F5Q15329 346 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 PHKG1Q16816 387 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 POM121L1PQ3SYA9 428 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 XKR7Q5GH72 579 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 LDLRAP1Q5SW96 308 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 OGFOD2Q6N063 350 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 GK5Q6ZS86 529 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 SPATA19Q7Z5L4 167 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 PIP4K2CQ8TBX8 421 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 BTN2A2Q8WVV5 523 aa25.87■■□□□ 1.73
CCDC88C-205ENST00000553403 DLG3Q92796 817 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms