RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 UBAP1Q9NZ09 502 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 MAP10Q9P2G4 905 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 B4GALT6Q9UBX8 382 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 CFAP20Q9Y6A4 193 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 CACNA1IQ9P0X4 2223 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 CABIN1Q9Y6J0 2220 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TRIOO75962 3097 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 FAM92AA1XBS5 289 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 GNGT2O14610 69 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 KERAO60938 352 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 PAPSS2O95340 614 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 IGSF6O95976 241 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 C1QCP02747 245 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 F11P03951 625 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 NTRK1P04629 796 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 UQCRBP14927 111 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF23P17027 643 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ETV3P41162 512 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 LIPEQ05469 1076 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 GTF2H2Q13888 395 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 STARD3Q14849 445 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 GTF2H2CQ6P1K8 395 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 LARP4Q71RC2 724 aaKnown RBP eCLIP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 GOLGA7Q7Z5G4 137 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 PDSS2Q86YH6 399 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 VRK3Q8IV63 474 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 SFTPA1Q8IWL2 248 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF786Q8N393 782 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 SFRP1Q8N474 314 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 CBR4Q8N4T8 237 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 NKAPQ8N5F7 415 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TRIML2Q8N7C3 387 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ELMO1Q92556 727 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 EGLN2Q96KS0 407 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 APOLD1Q96LR9 279 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 MTERF1Q99551 399 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 KCTD14Q9BQ13 255 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 ELAC1Q9H777 363 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 MRM3Q9HC36 420 aaKnown RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 LTB4R2Q9NPC1 389 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 IL37Q9NZH6 218 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 OPTCQ9UBM4 332 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 HEMK1Q9Y5R4 338 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-215ENST00000552823 MYO10Q9HD67 2058 aa5.51□□□□□ -1.53
LIMA1-215ENST00000552823 TRAV19A0A0A6YYK7 116 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 FOXD2O60548 495 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SLC22A3O75751 556 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CAPN15O75808 1086 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 RSL1D1O76021 490 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 DIRAS1O95057 198 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PGLSO95336 258 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CLTBP09497 229 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CR2P20023 1033 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 NR4A1P22736 598 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 EEF1B2P24534 225 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 IL12AP29459 219 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SERPINA4P29622 427 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 AQP1P29972 269 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 HTR7P34969 479 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 HNF4AP41235 474 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 RGS4P49798 205 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TPD52P55327 224 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 OR4D2P58180 307 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 WDR5P61964 334 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 MEF2AQ02078 507 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TNK2Q07912 1038 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ACOX1Q15067 660 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 MAPRE2Q15555 327 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TCEAL5Q5H9L2 206 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 C6orf136Q5SQH8 315 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 IER5LQ5T953 404 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CRTC3Q6UUV7 619 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CRTC1Q6UUV9 634 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CHST9Q7L1S5 443 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SETD3Q86TU7 594 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ST13P4Q8IZP2 240 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 HS3ST5Q8IZT8 346 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 OR10A6Q8NH74 314 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PIH1D2Q8WWB5 315 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SELENOMQ8WWX9 145 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PLD4Q96BZ4 506 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PPP1R2P1Q96PQ5 205 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TFB2MQ9H5Q4 396 aaKnown RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ATP13A3Q9H7F0 1226 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 BRD9Q9H8M2 597 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 IL21Q9HBE4 155 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 CMTM6Q9NX76 183 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ELOVL2Q9NXB9 296 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 AASSQ9UDR5 926 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF490Q9ULM2 529 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SLC22A14Q9Y267 594 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 MYO16Q9Y6X6 1858 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 C7orf72A4D263 438 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM202A6NGA9 273 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 SYCE1LA8MT33 242 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 PITPNM1O00562 1244 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 TLL1O43897 1013 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 DFNA5O60443 496 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 MAN1A2O60476 641 aa5.5□□□□□ -1.53
LIMA1-215ENST00000552823 WDR47O94967 919 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms