RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MLYCDO95822 493 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 F11P03951 625 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ENO2P09104 434 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 IRF1P10914 325 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FCGR1AP12314 374 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 IL7RP16871 459 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 CTPS1P17812 591 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 MATN1P21941 496 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 LPOP22079 712 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 HTR1EP28566 365 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 MAGEA11P43364 429 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 PIGFQ07326 219 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 BNIP3Q12983 259 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 PRKG2Q13237 762 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 NR6A1Q15406 480 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 DHRS4L2Q6PKH6 230 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 CYP20A1Q6UW02 462 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 PRSS55Q6UWB4 352 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ENPP6Q6UWR7 440 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 GOLGA7Q7Z5G4 137 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 HID1Q8IV36 788 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FBXO30Q8TB52 745 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 LKAAEAR1Q8TD35 194 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 BOCQ9BWV1 1114 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 NUSAP1Q9BXS6 441 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 LRRC3Q9BY71 257 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 HIPK3Q9H422 1215 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 SMURF2Q9HAU4 748 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 SPC25Q9HBM1 224 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FARSBQ9NSD9 589 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 OLA1Q9NTK5 396 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 PTBP2Q9UKA9 531 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 PCDHGA11Q9Y5H2 935 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 GOLGA8CPA6NN73 597 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ANKRD28O15084 1053 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 LSM1O15116 133 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 INPPL1O15357 1258 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 STX7O15400 261 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 SEPT4O43236 478 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 NOBOXO60393 691 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 CD160O95971 181 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ALPIP09923 528 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 CKBP12277 381 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF182P17025 639 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 RPL17P18621 184 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 NR4A1P22736 598 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 EEF1B2P24534 225 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 HSPA7P48741 367 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FLT3LGP49771 235 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 CLCN7P51798 805 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ARSFP54793 590 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 RPL38P63173 70 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ARF5P84085 180 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 RING1Q06587 406 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 BTG3Q14201 252 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 AP5B1Q2VPB7 878 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 GTDC1Q4AE62 458 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 SBSNQ6UWP8 590 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 SLC24A5Q71RS6 500 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 STK32CQ86UX6 486 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FAM126BQ8IXS8 530 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 CLDN19Q8N6F1 224 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 OR10Q1Q8NGQ4 319 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 OR6K2Q8NGY2 324 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FNDC8Q8TC99 324 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 TSPEARQ8WU66 669 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FIG4Q92562 907 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 BHMTQ93088 406 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF583Q96ND8 569 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF382Q96SR6 550 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 TBCDQ9BTW9 1192 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 MAGEH1Q9H213 219 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 NSUN3Q9H649 340 aaKnown RBP7.39□□□□□ -1.23
LIMA1-213ENST00000552720 FANCEQ9HB96 536 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 CD320Q9NPF0 282 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 MARCH5Q9NX47 278 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ELOVL2Q9NXB9 296 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ZIM2Q9NZV7 527 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ZNF639Q9UID6 485 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 RIMKLBQ9ULI2 386 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 ST14Q9Y5Y6 855 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 COMMD10Q9Y6G5 202 aa7.39□□□□□ -1.23
LIMA1-213ENST00000552720 MYOFQ9NZM1 2061 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 MOXD2PA6NHM9 499 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 SLC38A8A6NNN8 435 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 POM121CA8CG34 1229 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TMEM189-UBE2V1I3L0A0 370 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 KDELR3O43731 214 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 B3GALT4O96024 378 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ALBP02768 609 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 RHOCP08134 193 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ZDHHC11BP0C7U3 371 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 UMPSP11172 480 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 ELNP15502 786 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 DCKP27707 260 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 PIGAP37287 484 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 MTHFRP42898 656 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 TTPAP49638 278 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 NUP107P57740 925 aa7.38□□□□□ -1.23
LIMA1-213ENST00000552720 HMGCS1Q01581 520 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms