RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TSPAN12O95859 305 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 G6PDP11413 515 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CDH3P22223 829 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PRKACGP22612 351 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 GSTM2P28161 218 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 MTHFRP42898 656 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 GPR15P49685 360 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 KPNA1P52294 538 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-212ENST00000552491 OXCT1P55809 520 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ERVPABLB-1P60509 514 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ERVK-8P63133 956 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CD47Q08722 323 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 OXA1LQ15070 435 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PTPRRQ15256 657 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CTF1Q16619 201 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 RGS21Q2M5E4 152 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 MS4A13Q5J8X5 152 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PERM1Q5SV97 790 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 LAIR1Q6GTX8 287 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 SULT1C3Q6IMI6 304 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ZFAND4Q86XD8 727 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 HID1Q8IV36 788 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CLEC4FQ8N1N0 589 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CDYL2Q8N8U2 506 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 FNDC5Q8NAU1 212 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PDZD8Q8NEN9 1154 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 GPR150Q8NGU9 434 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 OR4L1Q8NH43 312 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 STAG3L4Q8TBR4 150 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 RAB2BQ8WUD1 216 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ITPKCQ96DU7 683 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 NRBF2Q96F24 287 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 SLC39A13Q96H72 371 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CDKN2AIPNLQ96HQ2 116 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ITCHQ96J02 903 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF583Q96ND8 569 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 GPR21Q99679 349 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 POPDC3Q9HBV1 291 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PCDH12Q9NPG4 1184 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CATSPERZQ9NTU4 200 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 VAPAQ9P0L0 249 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 AASSQ9UDR5 926 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 EIF2B4Q9UI10 523 aaKnown RBP5.35□□□□□ -1.55
LIMA1-212ENST00000552491 INVSQ9Y283 1065 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 WDR37Q9Y2I8 494 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CPQQ9Y646 472 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 GREB1Q4ZG55 1949 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 LOC100996750A0A140TA64 210 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 FAM234BA2RU67 622 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 LCHNA4D1U4 455 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PDHXO00330 501 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 BTN3A1O00481 513 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 E2F3O00716 465 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ANKRD28O15084 1053 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 OR1I1O60431 355 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 DFNA5O60443 496 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 RPP40O75818 363 aaKnown RBP5.35□□□□□ -1.55
LIMA1-212ENST00000552491 NPPAP01160 153 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CTSHP09668 335 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 UROSP10746 265 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PCMT1P22061 227 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 NFKBIAP25963 317 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 HPCAL1P37235 193 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 RAD23AP54725 363 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PPP2R2BQ00005 443 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 YWHAHQ04917 246 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-212ENST00000552491 FPGSQ05932 587 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 KCNAB2Q13303 367 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 GRB14Q14449 540 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 SKIV2LQ15477 1246 aaKnown RBP5.35□□□□□ -1.55
LIMA1-212ENST00000552491 TYSND1Q2T9J0 566 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 RBM48Q5RL73 367 aaKnown RBP5.35□□□□□ -1.55
LIMA1-212ENST00000552491 C6orf141Q5SZD1 244 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 MRNIPQ6NTE8 343 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 LETMD1Q6P1Q0 360 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 MSANTD2Q6P1R3 559 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 CRTC3Q6UUV7 619 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 TLK2Q86UE8 772 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 PIANPQ8IYJ0 282 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 C10orf111Q8N326 155 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 DPP10Q8N608 796 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 KLHDC9Q8NEP7 349 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 FBXO30Q8TB52 745 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ITFG1Q8TB96 612 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ZFP90Q8TF47 636 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 FRS2Q8WU20 508 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ZC3H15Q8WU90 426 aaKnown RBP5.35□□□□□ -1.55
LIMA1-212ENST00000552491 FATE1Q969F0 183 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 MUL1Q969V5 352 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 TAMM41Q96BW9 452 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ALPK1Q96QP1 1244 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 HGH1Q9BTY7 390 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 BEGAINQ9BUH8 593 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 KRTAP4-6Q9BYQ5 205 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 DERL2Q9GZP9 239 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 RAD21L1Q9H4I0 556 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ADARB2Q9NS39 739 aaKnown RBP5.35□□□□□ -1.55
LIMA1-212ENST00000552491 SMPD4Q9NXE4 827 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 FLRT1Q9NZU1 646 aa5.35□□□□□ -1.55
LIMA1-212ENST00000552491 ZIM2Q9NZV7 527 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms