RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	BAG1	Q99933	345 aa	Predicted RBP	7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	ZSCAN5A	Q9BUG6	496 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	SSBP4	Q9BWG4	385 aa	Predicted RBP	7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	EPN3	Q9H201	632 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	LRRN3	Q9H3W5	708 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	FAM83D	Q9H4H8	585 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	SYNDIG1	Q9H7V2	258 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	RMI1	Q9H9A7	625 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	ASCL3	Q9NQ33	180 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	THSD1	Q9NS62	852 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	SPATS2L	Q9NUQ6	558 aa	Known RBP	7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	TAAR2	Q9P1P5	351 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	KLHL8	Q9P2G9	620 aa	Predicted RBP	7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	IMPACT	Q9P2X3	320 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	PCDHA3	Q9Y5H8	950 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	ST14	Q9Y5Y6	855 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	RNF215	Q9Y6U7	377 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	ITPR1	Q14643	2758 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	BPTF	Q12830	3046 aa		7.6	□□□□□ -1.19
SNHG1-223	ENST00000545440	LOC285095	A0A1B0GVY8	99 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440		A0A1W2PNU3	283 aa	Predicted RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	HMX2	A2RU54	273 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	GRID2IP	A4D2P6	1211 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	CDRT15L2	A8MXV6	281 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	INPP4B	O15327	924 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	PDPK1	O15530	556 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ZW10	O43264	779 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	DNAJC6	O75061	913 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	PMPCB	O75439	489 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	EPO	P01588	193 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	FGF1	P05230	155 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ITGA2B	P08514	1039 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	HLA-DPA1	P20036	260 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	AK4	P27144	223 aa	Predicted RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	HMGCL	P35914	325 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ACTR1B	P42025	376 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	KIR3DL1	P43629	444 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	TNNT3	P45378	269 aa	Predicted RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	GPR3	P46089	330 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	FASLG	P48023	281 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	POLD2	P49005	469 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	INHBC	P55103	352 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	NAP1L1	P55209	391 aa	Known RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	RWDD2B	P57060	319 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ACTR1A	P61163	376 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	MPP3	Q13368	585 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	LLGL1	Q15334	1064 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	CPSF6	Q16630	551 aa	Known RBP eCLIP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	CCDC70	Q6NSX1	233 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	KDELC1	Q6UW63	502 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	C6orf15	Q6UXA7	325 aa	Predicted RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	B4GALNT4	Q76KP1	1039 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	TMC3	Q7Z5M5	1100 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	UBE3D	Q7Z6J8	389 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	B3GNT8	Q7Z7M8	397 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ZAR1	Q86SH2	424 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	CLEC14A	Q86T13	490 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	KIAA1328	Q86T90	577 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	SFTPA2	Q8IWL1	248 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	SYCE1	Q8N0S2	351 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	NAGS	Q8N159	534 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ZNF567	Q8N184	647 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ARL14	Q8N4G2	192 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	TRAM1L1	Q8N609	369 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ZNF248	Q8NDW4	579 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	ACRBP	Q8NEB7	543 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	SPATA22	Q8NHS9	363 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	WDR36	Q8NI36	951 aa	Known RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	RNF141	Q8WVD5	230 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	TMEM159	Q96B96	161 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	HAUS1	Q96CS2	278 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	EID2B	Q96D98	161 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	PLEKHG4B	Q96PX9	1271 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	FCRL5	Q96RD9	977 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	FERMT1	Q9BQL6	677 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	OSBPL8	Q9BZF1	889 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	GPR63	Q9BZJ6	419 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	STRADB	Q9C0K7	418 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	GBA3	Q9H227	469 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	CARD9	Q9H257	536 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	TRABD	Q9H4I3	376 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	SUDS3	Q9H7L9	328 aa	Predicted RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	HACD3	Q9P035	362 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	LRIT1	Q9P2V4	623 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	FAM153A	Q9UHL3	310 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	TRHDE	Q9UKU6	1024 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	CNOT6	Q9ULM6	557 aa	Known RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	SHOC2	Q9UQ13	582 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	TMEM98	Q9Y2Y6	226 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	OAS3	Q9Y6K5	1087 aa	Known RBP	7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	DUSP10	Q9Y6W6	482 aa		7.59	□□□□□ -1.19
SNHG1-223	ENST00000545440	SNRNP200	O75643	2136 aa	Known RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	COL6A6	A6NMZ7	2263 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	MACROD2	A1Z1Q3	448 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	RHPN2P1	A8MT19	583 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	GOLGA6L6	A8MZA4	724 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	MIF4GD	A9UHW6	222 aa	Known RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	PLD2	O14939	933 aa		7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	CASC3	O15234	703 aa	Known RBP	7.58	□□□□□ -1.2
SNHG1-223	ENST00000545440	NUAK1	O60285	661 aa		7.58	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms