RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ROPN1LQ96C74 230 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 LYSMD1Q96S90 227 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 MBD1Q9UIS9 605 aaPredicted RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 DTNAQ9Y4J8 743 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 BBIP1A8MTZ0 92 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 SYNCRIPO60506 623 aaKnown RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 ZCCHC18P0CG32 403 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 EPCAMP16422 314 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 CASP2P42575 452 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 PIK3CGP48736 1102 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 NAA20P61599 178 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 C6orf136Q5SQH8 315 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 LYPLAL1Q5VWZ2 237 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 TMEM215Q68D42 235 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 HACD2Q6Y1H2 254 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 Q6ZSR9 355 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 EFL1Q7Z2Z2 1120 aaKnown RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 SPATA19Q7Z5L4 167 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 TUBGCP5Q96RT8 1024 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 MRPL40Q9NQ50 206 aaKnown RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 SPHK2Q9NRA0 654 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 SPATS2LQ9NUQ6 558 aaKnown RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 AIG1Q9NVV5 245 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 WBP1LQ9NX94 342 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 B4GALT6Q9UBX8 382 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 RIMS3Q9UJD0 308 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 TNPO3Q9Y5L0 923 aaKnown RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 IRAK3Q9Y616 596 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 A6NHS1 94 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 TXNDC9O14530 226 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 TLL1O43897 1013 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 RNASEH2AO75792 299 aaKnown RBP16.06■□□□□ 0.16
COL4A1-204ENST00000543140 MATN4O95460 622 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 IRS1P35568 1242 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 BMPR1AP36894 532 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 ADGRE1Q14246 886 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 C6orf10Q5SRN2 563 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 ADIPOR2Q86V24 386 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 MIEF2Q96C03 454 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 SPDL1Q96EA4 605 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 MTG2Q9H4K7 406 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 PTBP2Q9UKA9 531 aaKnown RBP16.06■□□□□ 0.16
COL4A1-204ENST00000543140 OARD1Q9Y530 152 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 NME4O00746 187 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 RNASEH1O60930 286 aaKnown RBP16.06■□□□□ 0.16
COL4A1-204ENST00000543140 C1SP09871 688 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 B4GALNT1Q00973 533 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 ATP6AP1LQ52LC2 224 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 ARHGAP15Q53QZ3 475 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 FBXO46Q6PJ61 603 aaPredicted RBP16.06■□□□□ 0.16
COL4A1-204ENST00000543140 SFRP1Q8N474 314 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 PDPRQ8NCN5 879 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 ICA1LQ8NDH6 482 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 NUDT8Q8WV74 236 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 COPS8Q99627 209 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 CPEB1Q9BZB8 566 aaKnown RBP16.06■□□□□ 0.16
COL4A1-204ENST00000543140 RIC8BQ9NVN3 520 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 ZDHHC7Q9NXF8 308 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 WWOXQ9NZC7 414 aa16.06■□□□□ 0.16
COL4A1-204ENST00000543140 PRSS51A0A1B0GVH4 220 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 FXYD1O00168 92 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 FFAR3O14843 346 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 GPR42O15529 346 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 MTX2O75431 263 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 VCLP18206 1134 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 NSG1P42857 185 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 KCNK10P57789 538 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 ERVK-8P63133 956 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 ABRAXAS2Q15018 415 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 POM121L1PQ3SYA9 428 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 RARS2Q5T160 578 aaKnown RBP16.05■□□□□ 0.16
COL4A1-204ENST00000543140 GRASPQ7Z6J2 395 aaPredicted RBP16.05■□□□□ 0.16
COL4A1-204ENST00000543140 MILR1Q7Z6M3 343 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 OR2A12Q8NGT7 310 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SPPL3Q8TCT6 385 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 DCUN1D1Q96GG9 259 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 MCCC1Q96RQ3 725 aaPredicted RBP16.05■□□□□ 0.16
COL4A1-204ENST00000543140 GPATCH1Q9BRR8 931 aaKnown RBP16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SEMA6AQ9H2E6 1030 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SLC52A3Q9NQ40 469 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 ZDHHC3Q9NYG2 299 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SCOCQ9UIL1 159 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SUFUQ9UMX1 484 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 ANGPTL3Q9Y5C1 460 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 AK5Q9Y6K8 562 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 AGAP14A8MT82 685 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 PER2O15055 1255 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SLC22A3O75751 556 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 UQCRBP14927 111 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 PFKLP17858 780 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SOX11P35716 441 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 EPHA5P54756 1037 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 TRAF3Q13114 568 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 CAPRIN2Q6IMN6 1127 aaKnown RBP16.05■□□□□ 0.16
COL4A1-204ENST00000543140 GDPD4Q6W3E5 623 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SLC15A3Q8IY34 581 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 DNAJB14Q8TBM8 379 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 SKA2Q8WVK7 121 aaPredicted RBP16.05■□□□□ 0.16
COL4A1-204ENST00000543140 ARMC5Q96C12 935 aa16.05■□□□□ 0.16
COL4A1-204ENST00000543140 LRRC58Q96CX6 371 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms