RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RAB40ALP0C0E4 278 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 RORAP35398 523 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 GSDMDP57764 484 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 ABRQ12979 859 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 GTF2H3Q13889 308 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 NFE2L1Q14494 772 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 NR6A1Q15406 480 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 FBXO38Q6PIJ6 1188 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 HPS6Q86YV9 775 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 MAP7D3Q8IWC1 876 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 RHOT1Q8IXI2 618 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 GLIS1Q8NBF1 620 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 OR8K5Q8NH50 307 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 GDAP1Q8TB36 358 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 RAPGEF5Q92565 580 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 AGAP3Q96P47 875 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 SMAD5Q99717 465 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 NLNQ9BYT8 704 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 SLC25A51Q9H1U9 297 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 MAP10Q9P2G4 905 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 SNX7Q9UNH6 387 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 BTRCQ9Y297 605 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 CFAP20Q9Y6A4 193 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 A6NL46 340 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 MEN1O00255 615 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 DDX3YO15523 660 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 PROSCO94903 275 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 CBX6O95503 412 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 NDST3O95803 873 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 MTHFD1P11586 935 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 KDELR1P24390 212 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 HMGCLP35914 325 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 KPNA2P52292 529 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 VAV2P52735 878 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 AP1B1Q10567 949 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 SLC14A2Q15849 920 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 DUS1LQ6P1R4 473 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 FAM198BQ6UWH4 519 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 TICAM1Q8IUC6 712 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 TTC30BQ8N4P2 665 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 ZBTB2Q8N680 514 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 BRSK1Q8TDC3 778 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 SNRNP40Q96DI7 357 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 ZNF830Q96NB3 372 aaPredicted RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 INSM2Q96T92 566 aaPredicted RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 TLR10Q9BXR5 811 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 XPO4Q9C0E2 1151 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 CBX8Q9HC52 389 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 IL26Q9NPH9 171 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 IMP3Q9NV31 184 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 HEY1Q9Y5J3 304 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 CSMD1Q96PZ7 3565 aa17.37■□□□□ 0.37
CLSTN3-214ENST00000542663 OR2AG2A6NM03 316 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 UGT1A9O60656 530 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 LCA5LO95447 670 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 KLK3P07288 261 aaPredicted RBP17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 UGT1A6P19224 532 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 UGT1A1P22309 533 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 UGT1A4P22310 534 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 VARSP26640 1264 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 ARCN1P48444 511 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 NOMO1Q15155 1222 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 PLEKHN1Q494U1 663 aaPredicted RBP17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 FILIP1LQ4L180 1135 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 ZNF789Q5FWF6 425 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 FIGNQ5HY92 759 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 METRNLQ641Q3 311 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 ALKBH5Q6P6C2 394 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 MED25Q71SY5 747 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 B4GALNT4Q76KP1 1039 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 OOSP2Q86WS3 158 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 TMEM102Q8N9M5 508 aaPredicted RBP17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 DDHD1Q8NEL9 900 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 CPT1BQ92523 772 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 TTC25Q96NG3 672 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 OLFM3Q96PB7 478 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 UGT1A7Q9HAW7 530 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 UGT1A10Q9HAW8 530 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 UGT1A8Q9HAW9 530 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 ASF1BQ9NVP2 202 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 GPR83Q9NYM4 423 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 NENFQ9UMX5 172 aa17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 BZW2Q9Y6E2 419 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-214ENST00000542663 DIDO1Q9BTC0 2240 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 OR6C74A6NCV1 312 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 GAPDHSO14556 408 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 PBLDP30039 288 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 TYRO3Q06418 890 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 RAPSNQ13702 412 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 ATP1A4Q13733 1029 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 NR1I3Q14994 352 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 ANO6Q4KMQ2 910 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 TMTC4Q5T4D3 741 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 SLC9A4Q6AI14 798 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 TMEM220Q6QAJ8 160 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 NPNTQ6UXI9 565 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 CARFQ8N187 725 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 BEND7Q8N7W2 519 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 DTX3LQ8TDB6 740 aa17.35■□□□□ 0.37
CLSTN3-214ENST00000542663 SYN2Q92777 582 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms