RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SCRN2Q96FV2 425 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 ZNF597Q96LX8 424 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 OSBPL11Q9BXB4 747 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 ASB8Q9H765 288 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 ZNF696Q9H7X3 374 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SEMA4BQ9NPR2 832 aaPredicted RBP9.73□□□□□ -0.85
SS18-205ENST00000542420 SMOXQ9NWM0 555 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SMPD4Q9NXE4 827 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 KCTD5Q9NXV2 234 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 ZDHHC3Q9NYG2 299 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SUN2Q9UH99 717 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 ZNF225Q9UK10 706 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 PCDHA9Q9Y5H5 950 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SMIM31A0A1B0GVY4 71 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 FXYD1O00168 92 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 QSOX1O00391 747 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 NR5A2O00482 541 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 KPNA5O15131 536 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 OR1I1O60431 355 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 ZNF30P17039 623 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 CAPN3P20807 821 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 JAK1P23458 1154 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 SLC7A2P52569 658 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 HTRA4P83105 476 aaPredicted RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 SP140Q13342 867 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 GTF2H2Q13888 395 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 GRB7Q14451 532 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 GBX1Q14549 363 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 GGTA1PQ4G0N0 100 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 INTS11Q5TA45 600 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 GTF2H2CQ6P1K8 395 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 GAREM2Q75VX8 874 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 RETREG3Q86VR2 466 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 ZFAND4Q86XD8 727 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 PROSER1Q86XN7 944 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 FIBCD1Q8N539 461 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 ZBTB2Q8N680 514 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 PAPD5Q8NDF8 572 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 HIPK4Q8NE63 616 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 SLC35B4Q969S0 331 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 EID2BQ96D98 161 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 OTUB2Q96DC9 234 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 PKP2Q99959 881 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 SLC2A11Q9BYW1 496 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 FBRSL1Q9HCM7 1045 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 CFAP97Q9P2B7 532 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 SLC25A13Q9UJS0 675 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 C1orf232A0A0U1RR37 186 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 TSPAN11A1L157 253 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 RNASEH1O60930 286 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 KATNA1O75449 491 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 ZNF821O75541 412 aaPredicted RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 POP4O95707 220 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 CKMP06732 381 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 EBLN1P0CF75 366 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 SLC6A2P23975 617 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 HTR1EP28566 365 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 HOXA9P31269 272 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 HNF1BP35680 557 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 GGT5P36269 586 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 POLR2JP52435 117 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 DCDC1P59894 354 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 POLR2LP62875 67 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 TXNL4AP83876 142 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 PRKG2Q13237 762 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 MYLK3Q32MK0 819 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 PITRM1Q5JRX3 1037 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 C6orf136Q5SQH8 315 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 ATXN7L2Q5T6C5 722 aaPredicted RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 TXNDC8Q6A555 127 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 C22orf39Q6P5X5 142 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 ERMP1Q7Z2K6 904 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 GOLGA7Q7Z5G4 137 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 SLC15A3Q8IY34 581 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 APCDD1Q8J025 514 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 LILRA2Q8N149 483 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 EFCAB3Q8N7B9 438 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 WFDC5Q8TCV5 224 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 CLP1Q92989 425 aaKnown RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 GBP5Q96PP8 586 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 SLC22A12Q96S37 553 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 COPS7BQ9H9Q2 264 aaPredicted RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 BPIFA1Q9NP55 256 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 IL26Q9NPH9 171 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 GALPQ9UBC7 116 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 EVLQ9UI08 416 aaPredicted RBP9.72□□□□□ -0.85
SS18-205ENST00000542420 CRLS1Q9UJA2 301 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 SLC4A7Q9Y6M7 1214 aa9.72□□□□□ -0.85
SS18-205ENST00000542420 ATP6AP2A0A1C7CYW4 349 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 TMEM221A6NGB7 291 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 LRRC14BA6NHZ5 514 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 LEFTY2O00292 366 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 NME4O00746 187 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 TGM5O43548 720 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 RGS14O43566 566 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 ATP6AP2O75787 350 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 RNASEH2AO75792 299 aaKnown RBP9.71□□□□□ -0.85
SS18-205ENST00000542420 AP2A2O94973 939 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 TNFAIP8O95379 198 aa9.71□□□□□ -0.85
SS18-205ENST00000542420 C8GP07360 202 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms