RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 EML4Q9HC35 981 aaKnown RBP16.64■□□□□ 0.25
COPS3-212ENST00000539941 CYP4F12Q9HCS2 524 aa16.64■□□□□ 0.25
COPS3-212ENST00000539941 ZDHHC4Q9NPG8 344 aa16.64■□□□□ 0.25
COPS3-212ENST00000539941 ARHGEF3Q9NR81 526 aa16.64■□□□□ 0.25
COPS3-212ENST00000539941 DNAJC28Q9NX36 388 aa16.64■□□□□ 0.25
COPS3-212ENST00000539941 L3MBTL1Q9Y468 752 aa16.64■□□□□ 0.25
COPS3-212ENST00000539941 FADS3Q9Y5Q0 445 aa16.64■□□□□ 0.25
COPS3-212ENST00000539941 PIAS3Q9Y6X2 628 aa16.64■□□□□ 0.25
COPS3-212ENST00000539941 C5orf42Q9H799 3197 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 NPEPPSL1A6NEC2 478 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 ANTXRLA6NF34 631 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 FADS2P1A8MWK0 482 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 CDC7O00311 574 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 KPNA5O15131 536 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 TSPAN6O43657 245 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 KLK8O60259 260 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 RECQL5O94762 991 aaPredicted RBP16.63■□□□□ 0.25
COPS3-212ENST00000539941 C6P13671 934 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 ENO3P13929 434 aaPredicted RBP16.63■□□□□ 0.25
COPS3-212ENST00000539941 MSH3P20585 1137 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 RPL14P50914 215 aaKnown RBP16.63■□□□□ 0.25
COPS3-212ENST00000539941 LSMEM2Q8N112 164 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 MYO1HQ8N1T3 1032 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 ZNF781Q8N8C0 355 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 B4GALNT2Q8NHY0 566 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 CXorf40AQ8TE69 158 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 NUS1Q96E22 293 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 PHF21BQ96EK2 531 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 TRIM4Q9C037 500 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 CD320Q9NPF0 282 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 PNPOQ9NVS9 261 aa16.63■□□□□ 0.25
COPS3-212ENST00000539941 SUPT3HB4E1H0 165 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 STX16-NPEPL1H3BU86 382 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 UBXN8O00124 270 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 STX16O14662 325 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 LZTS3O60299 673 aaPredicted RBP16.62■□□□□ 0.25
COPS3-212ENST00000539941 SUPT3HO75486 399 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 CHRNGP07510 517 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 GFAPP14136 432 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 ATP6V1C1P21283 382 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 DRD3P35462 400 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 WASP42768 502 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 SEC13P55735 322 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 GRSF1Q12849 480 aaKnown RBP eCLIP16.62■□□□□ 0.25
COPS3-212ENST00000539941 BNIP1Q12981 228 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 ZNF678Q5SXM1 525 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 PTCRAQ6ISU1 281 aaPredicted RBP16.62■□□□□ 0.25
COPS3-212ENST00000539941 FRMD7Q6ZUT3 714 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 GPSM1Q86YR5 675 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 FBXO39Q8N4B4 442 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 PTGR2Q8N8N7 351 aaPredicted RBP16.62■□□□□ 0.25
COPS3-212ENST00000539941 SKA1Q96BD8 255 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 KLHL29Q96CT2 875 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 HEY2Q9UBP5 337 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 VTI1BQ9UEU0 232 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 LIMD1Q9UGP4 676 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 IKZF3Q9UKT9 509 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 LRRK1Q38SD2 2015 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 PLK4O00444 970 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 ZNF195O14628 629 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 MID1O15344 667 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 EGFP01133 1207 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 IL9P15248 144 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 ACADSP16219 412 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 ITGB6P18564 788 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 MRPS21P82921 87 aaKnown RBP16.62■□□□□ 0.25
COPS3-212ENST00000539941 ZBTB16Q05516 673 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 PON2Q15165 354 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 ZRSR2Q15696 482 aaKnown RBP16.62■□□□□ 0.25
COPS3-212ENST00000539941 AGBL4Q5VU57 503 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 PHYKPLQ8IUZ5 450 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 EXT2Q93063 718 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 ERP27Q96DN0 273 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 FAR2Q96K12 515 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 C1QTNF3Q9BXJ4 246 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.62■□□□□ 0.25
COPS3-212ENST00000539941 NUDT4Q9NZJ9 180 aa16.62■□□□□ 0.25
COPS3-212ENST00000539941 APOBEC2Q9Y235 224 aaKnown RBP16.62■□□□□ 0.25
COPS3-212ENST00000539941 MATN2O00339 956 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 MMP20O60882 483 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 UBOX5O94941 541 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 LMNAP02545 664 aaKnown RBP16.61■□□□□ 0.25
COPS3-212ENST00000539941 FTH1P02794 183 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 MPSTP25325 297 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 AOAHP28039 575 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 ALDH18A1P54886 795 aaKnown RBP16.61■□□□□ 0.25
COPS3-212ENST00000539941 RPS14P62263 151 aaKnown RBP16.61■□□□□ 0.25
COPS3-212ENST00000539941 KLC1Q07866 573 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 GBX1Q14549 363 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 PFKFB4Q16877 469 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 PUS10Q3MIT2 529 aaKnown RBP16.61■□□□□ 0.25
COPS3-212ENST00000539941 HSF5Q4G112 596 aaPredicted RBP16.61■□□□□ 0.25
COPS3-212ENST00000539941 ACSBG2Q5FVE4 666 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 PLEKHS1Q5SXH7 462 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 FAM91A1Q658Y4 838 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 AFAP1L2Q8N4X5 818 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 AADATQ8N5Z0 425 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 IL17RCQ8NAC3 791 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 FAM131CQ96AQ9 280 aa16.61■□□□□ 0.25
COPS3-212ENST00000539941 CCDC28BQ9BUN5 200 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms