RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TGIF1Q15583 401 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 PPP1R21Q6ZMI0 780 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 SERPINA9Q86WD7 417 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 ZFAND4Q86XD8 727 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 RBM12BQ8IXT5 1001 aaKnown RBP14.49□□□□□ -0.09
USP28-204ENST00000537642 PIANPQ8IYJ0 282 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 LILRA3Q8N6C8 439 aaPredicted RBP14.49□□□□□ -0.09
USP28-204ENST00000537642 HEXDCQ8WVB3 486 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 TAAR9Q96RI9 348 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 WWP1Q9H0M0 922 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 CASS4Q9NQ75 786 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.49□□□□□ -0.09
USP28-204ENST00000537642 FAM8A1Q9UBU6 413 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 KLHL3Q9UH77 587 aa14.49□□□□□ -0.09
USP28-204ENST00000537642 MGAQ8IWI9 3026 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 KLHL33A6NCF5 533 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 OR51F1A6NGY5 319 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 EFCAB7A8K855 629 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 B4E171 279 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 CFAP99D6REC4 459 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 C9P02748 559 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 APRTP07741 180 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 AMD1P17707 334 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 TSPAN7P41732 249 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 UCNP55089 124 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 KCTD19Q17RG1 926 aaPredicted RBP14.48□□□□□ -0.09
USP28-204ENST00000537642 SKIDA1Q1XH10 827 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 TAS2R42Q7RTR8 314 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 FAM129CQ86XR2 697 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 PLXDC1Q8IUK5 500 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 REXO1L1PQ8IX06 675 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 BMPERQ8N8U9 685 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 PRELID2Q8N945 189 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 OR13J1Q8NGT2 312 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 RSC1A1Q92681 617 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 ART4Q93070 314 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 RANBP9Q96S59 729 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 INSM2Q96T92 566 aaPredicted RBP14.48□□□□□ -0.09
USP28-204ENST00000537642 KCNF1Q9H3M0 494 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 SLC2A6Q9UGQ3 507 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 ACSL5Q9ULC5 683 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 PCDHGA3Q9Y5H0 932 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 CFAP20Q9Y6A4 193 aaKnown RBP14.48□□□□□ -0.09
USP28-204ENST00000537642 IGSF10Q6WRI0 2623 aa14.48□□□□□ -0.09
USP28-204ENST00000537642 SMG1Q96Q15 3661 aaKnown RBP14.48□□□□□ -0.09
USP28-204ENST00000537642 HEATR9A2RTY3 570 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 CCDC162PA2VCL2 907 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 GAS8O95995 478 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 LIPCP11150 499 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 MTHFD1P11586 935 aaKnown RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 MSNP26038 577 aaKnown RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 CD82P27701 267 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 FOXN2P32314 431 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 CAPZBP47756 277 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 LEPRP48357 1165 aaKnown RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 DBN1Q16643 649 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 ZNF658BQ4V348 819 aaPredicted RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 TSTD2Q5T7W7 516 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 ARHGAP40Q5TG30 622 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 TMEM164Q5U3C3 297 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 DUS1LQ6P1R4 473 aaKnown RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 GPR155Q7Z3F1 870 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 DTX1Q86Y01 620 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 CFAP206Q8IYR0 622 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 RASGEF1CQ8N431 466 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 SPDYE1Q8NFV5 336 aaPredicted RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 HM13Q8TCT9 377 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 JPH3Q8WXH2 748 aaPredicted RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 C9orf72Q96LT7 481 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 RMDN2Q96LZ7 410 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 ZNF778Q96MU6 729 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 TGM7Q96PF1 710 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 DDA1Q9BW61 102 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 EIF2B3Q9NR50 452 aaKnown RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 IMP3Q9NV31 184 aaKnown RBP14.47□□□□□ -0.09
USP28-204ENST00000537642 SLC39A1Q9NY26 324 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 RIMKLBQ9ULI2 386 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 JRKLQ9Y4A0 524 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 B3GALT1Q9Y5Z6 326 aa14.47□□□□□ -0.09
USP28-204ENST00000537642 C17orf113A0A1B0GUU1 675 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.46□□□□□ -0.09
USP28-204ENST00000537642 CAPN5O15484 640 aaPredicted RBP14.46□□□□□ -0.09
USP28-204ENST00000537642 EFSO43281 561 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 POLBP06746 335 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 ANKRD34CP0C6C1 535 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 ADRA1DP25100 572 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 BASP1P80723 227 aaKnown RBP14.46□□□□□ -0.09
USP28-204ENST00000537642 MC2RQ01718 297 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 VAC14Q08AM6 782 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 SRSF6Q13247 344 aaKnown RBP14.46□□□□□ -0.09
USP28-204ENST00000537642 SOWAHCQ53LP3 525 aaPredicted RBP14.46□□□□□ -0.09
USP28-204ENST00000537642 ANKS6Q68DC2 871 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 CAPRIN2Q6IMN6 1127 aaKnown RBP14.46□□□□□ -0.09
USP28-204ENST00000537642 C4orf22Q6V702 233 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 GSTA5Q7RTV2 222 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 CLDN19Q8N6F1 224 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 HDAC10Q969S8 669 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 MS4A14Q96JA4 679 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 C12orf66Q96MD2 445 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 BBC3Q96PG8 261 aaPredicted RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms