RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TMEM159Q96B96 161 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 PPM1MQ96MI6 270 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 FCRL3Q96P31 734 aaPredicted RBP10.43□□□□□ -0.74
CD44-227ENST00000528086 FRMD8P1Q9BZ68 369 aaPredicted RBP10.43□□□□□ -0.74
CD44-227ENST00000528086 DPH1Q9BZG8 443 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 WWP1Q9H0M0 922 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 OR52A5Q9H2C5 316 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 RAB6BQ9NRW1 208 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 POT1Q9NUX5 634 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 ZDHHC3Q9NYG2 299 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 SEMA5BQ9P283 1151 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 ZNF148Q9UQR1 794 aa10.43□□□□□ -0.74
CD44-227ENST00000528086 DNMT3AQ9Y6K1 912 aaPredicted RBP10.43□□□□□ -0.74
CD44-227ENST00000528086 FER1L5A0AVI2 2057 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 USP27XA6NNY8 438 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 EFCAB7A8K855 629 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 B4E171 279 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 K7ENP7 123 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 DUX1O43812 170 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 CEP104O60308 925 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 OR1I1O60431 355 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 KCNJ13O60928 360 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 UBXN7O94888 489 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 VIPP01282 170 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 PRB1P04280 392 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 TPBGLP0DKB5 382 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 MTHFD1P11586 935 aaKnown RBP10.42□□□□□ -0.74
CD44-227ENST00000528086 MSH3P20585 1137 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 ARNTP27540 789 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 AKT1P31749 480 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 FDFT1P37268 417 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 TSPAN7P41732 249 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 MAPK9P45984 424 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 CXADRP78310 365 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 SH3BP2P78314 561 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 CRADDP78560 199 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 MC2RQ01718 297 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 SEPT6Q14141 434 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 TSTD2Q5T7W7 516 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 ARHGAP40Q5TG30 622 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 ANKS6Q68DC2 871 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 INO80CQ6PI98 192 aaPredicted RBP10.42□□□□□ -0.74
CD44-227ENST00000528086 NAPRTQ6XQN6 538 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 AGGF1Q8N302 714 aaeCLIP10.42□□□□□ -0.74
CD44-227ENST00000528086 AGBL5Q8NDL9 886 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 TRIM58Q8NG06 486 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 LKAAEAR1Q8TD35 194 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 UBE2Q2Q8WVN8 375 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 HDAC10Q969S8 669 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 C9orf72Q96LT7 481 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 PPP1R2P1Q96PQ5 205 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 TAAR9Q96RI9 348 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 CTRCQ99895 268 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 TRIM56Q9BRZ2 755 aaKnown RBP10.42□□□□□ -0.74
CD44-227ENST00000528086 SEMA4CQ9C0C4 833 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 B3GNT4Q9C0J1 378 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 MARCH4Q9P2E8 410 aaPredicted RBP10.42□□□□□ -0.74
CD44-227ENST00000528086 FAM8A1Q9UBU6 413 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 KLHL3Q9UH77 587 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 SEC16AO15027 2179 aa10.42□□□□□ -0.74
CD44-227ENST00000528086 COL6A6A6NMZ7 2263 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 IGHV5-51A0A0C4DH38 117 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 TEX51A0A1B0GUA7 166 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 ERI2A8K979 691 aaKnown RBP10.41□□□□□ -0.74
CD44-227ENST00000528086 GOLGA6L6A8MZA4 724 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 CAPN5O15484 640 aaPredicted RBP10.41□□□□□ -0.74
CD44-227ENST00000528086 PSMD3O43242 534 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 POLBP06746 335 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 APRTP07741 180 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 ANKRD34CP0C6C1 535 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 LIPCP11150 499 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 ATP1B2P14415 290 aaPredicted RBP10.41□□□□□ -0.74
CD44-227ENST00000528086 SLC2A4P14672 509 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 ZNF28P17035 718 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 ITGALP20701 1170 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 MSNP26038 577 aaKnown RBP10.41□□□□□ -0.74
CD44-227ENST00000528086 HADHAP40939 763 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 TNNT3P45378 269 aaPredicted RBP10.41□□□□□ -0.74
CD44-227ENST00000528086 CAPZBP47756 277 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 CDH17Q12864 832 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 GTF2H3Q13889 308 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 LONRF2Q1L5Z9 754 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 GPR33Q49SQ1 333 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 ZRANB3Q5FWF4 1079 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 ANKRD22Q5VYY1 191 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 KIAA1614Q5VZ46 1190 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 FBXO38Q6PIJ6 1188 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 GPR155Q7Z3F1 870 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 LDB1Q86U70 411 aaPredicted RBP10.41□□□□□ -0.74
CD44-227ENST00000528086 CFAP206Q8IYR0 622 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 KLHL6Q8WZ60 621 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 NKD1Q969G9 470 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 SH3KBP1Q96B97 665 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 PDLIM2Q96JY6 352 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 RANBP9Q96S59 729 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 COPS8Q99627 209 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 DPYSL5Q9BPU6 564 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 FERMT1Q9BQL6 677 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.41□□□□□ -0.74
CD44-227ENST00000528086 TWSG1Q9GZX9 223 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms