RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 OSCP1Q8WVF1 389 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBLCP1Q8WVY7 318 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GLMPQ8WWB7 406 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSPC1Q8WXF1 523 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ASB10Q8WXI3 467 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ROBO4Q8WZ75 1007 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IP6K1Q92551 441 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LPGAT1Q92604 370 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPIPB3Q92617 1050 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRCCQ92733 491 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCL2L2Q92843 193 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EXT2Q93063 718 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GTF3C6Q969F1 213 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZKSCAN4Q969J2 545 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ITFG2Q969R8 447 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLAMF9Q96A28 289 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB7BQ96AH8 199 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MIB2Q96AX9 1013 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SNRNP40Q96DI7 357 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARHGEF26Q96DR7 871 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DTNBP1Q96EV8 351 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MMABQ96EY8 250 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MCRS1Q96EZ8 462 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C11orf24Q96F05 449 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C14orf79Q96F83 325 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRMT61AQ96FX7 289 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MARS2Q96GW9 593 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MED30Q96HR3 178 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 DHTKD1Q96HY7 919 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TPD52L3Q96J77 140 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 EPSTI1Q96J88 318 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIWIL1Q96J94 861 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRIG1Q96JA1 1093 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF333Q96JL9 665 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZBTB45Q96K62 511 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RMDN2Q96LZ7 410 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CEP295NLQ96MC4 621 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NSMCE2Q96MF7 247 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF778Q96MU6 729 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM210AQ96ND0 272 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLHL32Q96NJ5 620 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC46A1Q96NT5 459 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 WDFY2Q96P53 400 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLHL5Q96PQ7 755 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SNX18Q96RF0 628 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 INTS14Q96SY0 518 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAD1Q99259 594 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PAFAH2Q99487 392 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PKP4Q99569 1192 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZBTB18Q99592 522 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAD9AQ99638 391 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNRNPABQ99729 332 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPA33Q99795 319 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MYOCQ99972 504 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SEMA3CQ99985 751 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAL3ST1Q99999 423 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC77Q9BR77 488 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ERP44Q9BS26 406 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIMREGQ9BSJ6 248 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTG1Q9BT17 334 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 INPP5KQ9BT40 448 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TPPP3Q9BW30 176 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CARD6Q9BX69 1037 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 VN1R3Q9BXE9 311 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TLR10Q9BXR5 811 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TEX13AQ9BXU3 409 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NFKBIZQ9BYH8 718 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 IFIH1Q9BYX4 1025 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 GCOM2Q9BZD3 368 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NACAP1Q9BZK3 213 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RTN4RQ9BZR6 473 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PKIBQ9C010 78 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRIM7Q9C029 511 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRRCC1Q9C099 1032 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 TTYH3Q9C0H2 523 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCSER1Q9C0I3 900 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 POLR1EQ9GZS1 481 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTDSP1Q9GZU7 261 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLPBQ9H078 707 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 LSG1Q9H089 658 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPATC1LQ9H0A9 340 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ENKD1Q9H0I2 346 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB17Q9H0T7 212 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 THAP2Q9H0W7 228 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM234AQ9H0X4 552 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATG10Q9H0Y0 220 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLCO5A1Q9H2Y9 848 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PNNQ9H307 717 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNK15Q9H427 330 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDZD7Q9H5P4 517 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 C6orf106Q9H6K1 298 aaPredicted RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 CXorf36Q9H7Y0 433 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 NOL11Q9H8H0 719 aaKnown RBP0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 COQ10BQ9H8M1 238 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ECT2Q9H8V3 914 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANKZF1Q9H8Y5 726 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 SFXN1Q9H9B4 322 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 COG4Q9H9E3 785 aa0.58□□□□□ -2.32
RNU4-54P-201ENST00000516428 AKIRIN1Q9H9L7 192 aaPredicted RBP0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms