RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ZNF438Q7Z4V0 828 aa14□□□□□ -0.17
NUP54-216ENST00000514901 TMPRSS12Q86WS5 348 aa14□□□□□ -0.17
NUP54-216ENST00000514901 CILP2Q8IUL8 1156 aa14□□□□□ -0.17
NUP54-216ENST00000514901 CFAP206Q8IYR0 622 aa14□□□□□ -0.17
NUP54-216ENST00000514901 SLC37A2Q8TED4 501 aa14□□□□□ -0.17
NUP54-216ENST00000514901 CCDC74AQ96AQ1 378 aa14□□□□□ -0.17
NUP54-216ENST00000514901 CCDC3Q9BQI4 270 aa14□□□□□ -0.17
NUP54-216ENST00000514901 FAM167BQ9BTA0 163 aa14□□□□□ -0.17
NUP54-216ENST00000514901 CARD6Q9BX69 1037 aa14□□□□□ -0.17
NUP54-216ENST00000514901 LDHAL6BQ9BYZ2 381 aaPredicted RBP14□□□□□ -0.17
NUP54-216ENST00000514901 FAM114A2Q9NRY5 505 aa14□□□□□ -0.17
NUP54-216ENST00000514901 INTS10Q9NVR2 710 aaKnown RBP14□□□□□ -0.17
NUP54-216ENST00000514901 CPNE7Q9UBL6 633 aa14□□□□□ -0.17
NUP54-216ENST00000514901 GNPTGQ9UJJ9 305 aa14□□□□□ -0.17
NUP54-216ENST00000514901 PCDHB1Q9Y5F3 818 aa14□□□□□ -0.17
NUP54-216ENST00000514901 PRSS21Q9Y6M0 314 aa14□□□□□ -0.17
NUP54-216ENST00000514901 RNF215Q9Y6U7 377 aa14□□□□□ -0.17
NUP54-216ENST00000514901 TRBV23OR9-2A0A075B6M9 112 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 GOLGA8KD6RF30 607 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 GOLGA8TH3BQL2 631 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 LIN7AO14910 233 aaPredicted RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 TCEA3O75764 348 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 EML2O95834 649 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 RPL10P27635 214 aaKnown RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 SLC7A5Q01650 507 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 GUCY2DQ02846 1103 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 HHEXQ03014 270 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 NR1D2Q14995 579 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 CLPPQ16740 277 aaPredicted RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 PERM1Q5SV97 790 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 STEAP4Q687X5 459 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 PTRHD1Q6GMV3 140 aaKnown RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 DHRS13Q6UX07 377 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 FAM83HQ6ZRV2 1179 aaPredicted RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 CEP128Q6ZU80 1094 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 MICALCLQ6ZW33 695 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 LDB1Q86U70 411 aaPredicted RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 KCNMB4Q86W47 210 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 IGDCC3Q8IVU1 814 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 SFTPA2Q8IWL1 248 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 TRIM48Q8IWZ4 208 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 RBM12BQ8IXT5 1001 aaKnown RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 NOA1Q8NC60 698 aaKnown RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 PATE1Q8WXA2 126 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 CCDC97Q96F63 343 aaPredicted RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 PWWP2AQ96N64 755 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 PANX3Q96QZ0 392 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 TRIM56Q9BRZ2 755 aaKnown RBP13.99□□□□□ -0.17
NUP54-216ENST00000514901 UCK1Q9HA47 277 aa13.99□□□□□ -0.17
NUP54-216ENST00000514901 KPNA5O15131 536 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 PPM1DO15297 605 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 BANF1O75531 89 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 VIPP01282 170 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 ESR1P03372 595 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 BRAFP15056 766 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 CD151P48509 253 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 UBE2IP63279 158 aaKnown RBP13.98□□□□□ -0.17
NUP54-216ENST00000514901 INSM1Q01101 510 aaPredicted RBP13.98□□□□□ -0.17
NUP54-216ENST00000514901 FOXC1Q12948 553 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 CLCA4Q14CN2 919 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 SEPT7Q16181 437 aaKnown RBP13.98□□□□□ -0.17
NUP54-216ENST00000514901 ZNF658BQ4V348 819 aaPredicted RBP13.98□□□□□ -0.17
NUP54-216ENST00000514901 HSP90AA5PQ58FG0 334 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 DNTTIP2Q5QJE6 756 aaKnown RBP13.98□□□□□ -0.17
NUP54-216ENST00000514901 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.98□□□□□ -0.17
NUP54-216ENST00000514901 ZNF470Q6ECI4 717 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 UNC5AQ6ZN44 842 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 KIAA0408Q6ZU52 694 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 TMPRSS7Q7RTY8 843 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 CHCHD4Q8N4Q1 142 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 FBXO25Q8TCJ0 367 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 PYROXD1Q8WU10 500 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 NAT14Q8WUY8 206 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 ZFPM2Q8WW38 1151 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 LPGAT1Q92604 370 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 GRAMD1AQ96CP6 724 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 CXorf40BQ96DE9 158 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 SLC38A3Q99624 504 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 TSPYL1Q9H0U9 437 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 P2RY12Q9H244 342 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 LRRN3Q9H3W5 708 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 COG4Q9H9E3 785 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 L2HGDHQ9H9P8 463 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 EPB41L5Q9HCM4 733 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 POT1Q9NUX5 634 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 CHMP2BQ9UQN3 213 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 HEBP2Q9Y5Z4 205 aa13.98□□□□□ -0.17
NUP54-216ENST00000514901 UBA6A0AVT1 1052 aaPredicted RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 FAM221BA6H8Z2 402 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 ESPNB1AK53 854 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 BHMG1C9JSJ3 638 aaPredicted RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 TMX2-CTNND1H3BSU7 103 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 IFRD1O00458 451 aaPredicted RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 NTN3O00634 580 aaPredicted RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 S1PR4O95977 384 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 GSTA2P09210 222 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 SLC35G4P0C7Q5 338 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 JUPP14923 745 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 NDUFS1P28331 727 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 ALDH4A1P30038 563 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms