RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MGME1Q9BQP7 344 aa8.58□□□□□ -1.04
LIMCH1-209ENST00000509277 TDRD1Q9BXT4 1180 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-209ENST00000509277 POLR1BQ9H9Y6 1135 aa8.58□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC30A1Q9Y6M5 507 aa8.58□□□□□ -1.04
LIMCH1-209ENST00000509277 NOTOA8MTQ0 251 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 HOXC11O43248 304 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 HSPA4LO95757 839 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CRABP2P29373 138 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 AKT1P31749 480 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 NR4A2P43354 598 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ARSDP51689 593 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SF3B4Q15427 424 aaKnown RBP eCLIP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 INO80DQ53TQ3 878 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 AAGABQ6PD74 315 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 KDELC1Q6UW63 502 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ATG14Q6ZNE5 492 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 STRA8Q7Z7C7 330 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PQLC1Q8N2U9 271 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PHTF2Q8N3S3 785 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 HDDC3Q8N4P3 179 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SCAMP4Q969E2 229 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 HHIPQ96QV1 700 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 WDR83Q9BRX9 315 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 WDR55Q9H6Y2 383 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CAB39LQ9H9S4 337 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 DNAJC28Q9NX36 388 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 B4GALT6Q9UBX8 382 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 MTF2Q9Y483 593 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 GMEB1Q9Y692 573 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PTPRZ1P23471 2315 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ABCA7Q8IZY2 2146 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CABIN1Q9Y6J0 2220 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3DA0A087WVF3 549 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3IA0A087WXS9 549 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3EA0A087X179 549 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3KA0A087X1G2 549 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3FA6NER0 549 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 FAM170BA6NMN3 283 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3LB9A6J9 549 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CFAP99D6REC4 459 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 MATN2O00339 956 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC31A1O15431 190 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PSMD3O43242 534 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CHEK2O96017 543 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 FUCA1P04066 466 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ENO2P09104 434 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CISD3P0C7P0 127 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3HP0C7X1 549 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 MYCLP1P12525 358 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 DDX5P17844 614 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CDH2P19022 906 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PBLDP30039 288 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 HNF1BP35680 557 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CDKN1CP49918 316 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 NR1H2P55055 460 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC12A1Q13621 1099 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PTPRNQ16849 979 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 RGS21Q2M5E4 152 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 C5orf22Q49AR2 442 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 FGD3Q5JSP0 725 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3GQ6DHY5 549 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3CQ6IPX1 549 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 NCEH1Q6PIU2 408 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SNX32Q86XE0 403 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ZSWIM9Q86XI8 627 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ETFBKMTQ8IXQ9 262 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TBC1D3Q8IZP1 549 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 GFM2Q969S9 779 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF599Q96NL3 588 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 IL22Q9GZX6 179 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 LMAN1LQ9HAT1 526 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CD93Q9NPY3 652 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 FBXO9Q9UK97 447 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC39A10Q9ULF5 831 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PSAT1Q9Y617 370 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CROCCQ5TZA2 2017 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 NPIPB15A6NHN6 443 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 A8MV72 311 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ALOX15BO15296 676 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 MMP20O60882 483 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 DLGAP3O95886 979 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SLC12A2P55011 1212 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 CDKL1Q00532 357 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TRIM25Q14258 630 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SMAD2Q15796 467 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PCID2Q5JVF3 399 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF648Q5T619 568 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 PDPK2PQ6A1A2 396 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 LRRC8EQ6NSJ5 796 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 UGT2A3Q6UWM9 527 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 FAM217AQ8IXS0 508 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 WFIKKN2Q8TEU8 576 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 SH3GL1Q99961 368 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 NAA50Q9GZZ1 169 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 STN1Q9H668 368 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 ZFYVE1Q9HBF4 777 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 VPS45Q9NRW7 570 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 FAIMQ9NVQ4 179 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 EPS15L1Q9UBC2 864 aa8.57□□□□□ -1.04
LIMCH1-209ENST00000509277 TCRBV21S2A2A0A5A6 115 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms