RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 DPM1O60762 260 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 MTHFD1P11586 935 aaKnown RBP20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 MLLT10P55197 1068 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 MPP3Q13368 585 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 RPE65Q16518 533 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 PWWP2BQ6NUJ5 590 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 LUZP1Q86V48 1076 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 SPATA22Q8NHS9 363 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 CPT1CQ8TCG5 803 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 BLOC1S5Q8TDH9 187 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 TADA1Q96BN2 335 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 DCUN1D1Q96GG9 259 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 C17orf62Q9BQA9 187 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 PSMD13Q9UNM6 376 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 DOPEY2Q9Y3R5 2298 aa20.57■□□□□ 0.88
SQSTM1-210ENST00000506042 IGHV5-51A0A0C4DH38 117 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 BLACEA4D250 179 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 C2orf81A6NN90 581 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 WNT3AP56704 352 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 ADCY2Q08462 1091 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 TMEM220Q6QAJ8 160 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 FAM151BQ6UXP7 276 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 C11orf96Q7Z7L8 435 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 D2HGDHQ8N465 521 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 HEXDCQ8WVB3 486 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 PPP1R2P1Q96PQ5 205 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 MAP3K3Q99759 626 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 CCM2Q9BSQ5 444 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 VPS37BQ9H9H4 285 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 IL26Q9NPH9 171 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 SMOXQ9NWM0 555 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 UBP1Q9NZI7 540 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 IFNKQ9P0W0 207 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 TRHDEQ9UKU6 1024 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 SNX7Q9UNH6 387 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 PADI2Q9Y2J8 665 aa20.56■□□□□ 0.88
SQSTM1-210ENST00000506042 CFAP99D6REC4 459 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 HBQ1P09105 142 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 EBLN1P0CF75 366 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 NR1D1P20393 614 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 PTPN3P26045 913 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 FNBP1LQ5T0N5 605 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 IZUMO3Q5VZ72 239 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 METRNLQ641Q3 311 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 PID1Q7Z2X4 250 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 HOOK3Q86VS8 718 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 RNF25Q96BH1 459 aaPredicted RBP20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 CLIP3Q96DZ5 547 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 C12orf66Q96MD2 445 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 LRFN5Q96NI6 719 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 ING2Q9H160 280 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 SLAMF7Q9NQ25 335 aa20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 CUEDC1Q9NWM3 386 aaPredicted RBP20.55■□□□□ 0.88
SQSTM1-210ENST00000506042 LOC285095A0A1B0GVY8 99 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 MGAT4DA6NG13 374 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 OR2AG2A6NM03 316 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 ZNF189O75820 626 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 ANXA9O76027 345 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 STK10O94804 968 aaKnown RBP20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 IGHEP01854 428 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 CD63P08962 238 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 FURINP09958 794 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 RAB40ALP0C0E4 278 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 FOLR1P15328 257 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 CDH3P22223 829 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 PBLDP30039 288 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 PRKD1Q15139 912 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 SIRPB2Q5JXA9 342 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 GPRC6AQ5T6X5 926 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 ITPRIPL1Q6GPH6 555 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 TTC30BQ8N4P2 665 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 SLC25A41Q8N5S1 370 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 RASGEF1AQ8N9B8 481 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 N4BP2L2Q92802 583 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 DPH2Q9BQC3 489 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 IL17CQ9P0M4 197 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 NENFQ9UMX5 172 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 WDR37Q9Y2I8 494 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 SPO11Q9Y5K1 396 aa20.54■□□□□ 0.88
SQSTM1-210ENST00000506042 ARGFXA6NJG6 315 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 HACD1B0YJ81 288 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 C9J4A7 227 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 TNNT1P13805 278 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 NFKB1P19838 968 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 CYP2A7P20853 494 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 LPOP22079 712 aaPredicted RBP20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 CCL11P51671 97 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 GEMP55040 296 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 NFE2L1Q14494 772 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 PRPSAP1Q14558 356 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 SLC1A5Q15758 541 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 KHDC1Q4VXA5 237 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 NPNTQ6UXI9 565 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 MED25Q71SY5 747 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 RAB43Q86YS6 212 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 TMEM102Q8N9M5 508 aaPredicted RBP20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 IPMKQ8NFU5 416 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 OR2L2Q8NH16 312 aa20.53■□□□□ 0.88
SQSTM1-210ENST00000506042 ZNF398Q8TD17 642 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms