RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 VPS26AO75436 327 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 GUCA1CO95843 209 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 NFKBIAP25963 317 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 RHOAP61586 193 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 INPP5AQ14642 412 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 USP41Q3LFD5 358 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 C8orf82Q6P1X6 216 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 ITIH5Q86UX2 942 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 GPR180Q86V85 440 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 ADGRG5Q8IZF4 528 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 PEX13Q92968 403 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 ALG2Q9H553 416 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 FANCEQ9HB96 536 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 MTRRQ9UBK8 725 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 WARS2Q9UGM6 360 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 OAS3Q9Y6K5 1087 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 CHD7Q9P2D1 2997 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 SMAD6O43541 496 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 BNIP3LO60238 219 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 RSL1D1O76021 490 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 RPS17P08708 135 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 MATN1P21941 496 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 UGT1A1P22309 533 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 UGT1A4P22310 534 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 UGT1A3P35503 534 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 UGT1A5P35504 534 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 HTR6P50406 440 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 ELAVL2Q12926 359 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 SGO1Q5FBB7 561 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 ARL14EPQ8N8R7 260 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 FBXO30Q8TB52 745 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 OSBPL6Q9BZF3 934 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 SMURF2Q9HAU4 748 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 CREBZFQ9NS37 354 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 CCM2LQ9NUG4 571 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 YIPF1Q9Y548 306 aa16.3■□□□□ 0.2
CCDC88B-210ENST00000494566 A0A087WXM4 84 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 ASPDHA6ND91 283 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 SNX2O60749 519 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 PRKACGP22612 351 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CSKP41240 450 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 BFSP2Q13515 415 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 TXNDC8Q6A555 127 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 MILR1Q7Z6M3 343 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 STK32CQ86UX6 486 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 GPSM1Q86YR5 675 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CLEC4FQ8N1N0 589 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CRIPAKQ8N1N5 446 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 DHRSXQ8N5I4 330 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 FAM86B1Q8N7N1 296 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 GPR63Q9BZJ6 419 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CCDC90BQ9GZT6 254 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 POPDC3Q9HBV1 291 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CORINQ9Y5Q5 1042 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 DOCK6Q96HP0 2047 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 PTGES3LE9PB15 166 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 TCF3P15923 654 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CA8P35219 290 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 TUFMP49411 452 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 ACADVLP49748 655 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 TPD52P55327 224 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 IL2P60568 153 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CREB5Q02930 508 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 ACBD5Q5T8D3 534 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 PIWIL3Q7Z3Z3 882 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 APCDD1Q8J025 514 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 TTC30BQ8N4P2 665 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 FNDC8Q8TC99 324 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 LKAAEAR1Q8TD35 194 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 ING2Q9H160 280 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 RPF2Q9H7B2 306 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 LHX3Q9UBR4 397 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 GOLGA4Q13439 2230 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 XYLBO75191 536 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CNPP09543 421 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 COL6A1P12109 1028 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 SHMT2P34897 504 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 PSMD8P48556 350 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 BTLAQ7Z6A9 289 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 FNDC5Q8NAU1 212 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 ADGRE3Q9BY15 652 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 VPS51Q9UID3 782 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 ZMYM5Q9UJ78 669 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 CLEC4EQ9ULY5 219 aa16.29■□□□□ 0.2
CCDC88B-210ENST00000494566 PIKFYVEQ9Y2I7 2098 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 CYBBP04839 570 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 MAP4P27816 1152 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 FPGSQ05932 587 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 BTG3Q14201 252 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 TGFBIQ15582 683 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 LETMD1Q6P1Q0 360 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 NCEH1Q6PIU2 408 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 PATL1Q86TB9 770 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 KIAA2013Q8IYS2 634 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 GPATCH1Q9BRR8 931 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 TSEN34Q9BSV6 310 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 KLF16Q9BXK1 252 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 TNKS2Q9H2K2 1166 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 SDR39U1Q9NRG7 319 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 AGPAT4Q9NRZ5 378 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms