RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 TCF4P15884 667 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 SOX8P57073 446 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 ABRQ12979 859 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 IFI16Q16666 785 aaKnown RBP13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 KYNUQ16719 465 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 ZXDCQ2QGD7 858 aaPredicted RBP13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 KHDC1Q4VXA5 237 aaKnown RBP13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 FAM69BQ5VUD6 431 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 IRF2BP2Q7Z5L9 587 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 TMC3Q7Z5M5 1100 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 TRAPPC5Q8IUR0 188 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 GALNT16Q8N428 558 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 ZADH2Q8N4Q0 377 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 CLEC1AQ8NC01 280 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 ENOX1Q8TC92 643 aaKnown RBP13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 ZFPM2Q8WW38 1151 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 CLIP3Q96DZ5 547 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 ERGIC2Q96RQ1 377 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 CLSTN2Q9H4D0 955 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 ZNF552Q9H707 407 aaPredicted RBP13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 MAGEE1Q9HCI5 957 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 HRASLS2Q9NWW9 162 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 LGALS16A8MUM7 142 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 TMCO5BA8MYB1 307 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 C9J4A7 227 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 PRSS44E7EML9 344 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 MTX2O75431 263 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 GZMAP12544 262 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 EDN3P14138 238 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 ADCY2Q08462 1091 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 PAFAH1B3Q15102 231 aaKnown RBP13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 ZNF789Q5FWF6 425 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 DCAF10Q5QP82 559 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 PRAMEF17Q5VTA0 474 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 CUZD1Q86UP6 607 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 KCNMB4Q86W47 210 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 FAM71BQ8TC56 605 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 BRSK1Q8TDC3 778 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 COG1Q8WTW3 980 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 ACTR5Q9H9F9 607 aaPredicted RBP13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 MRPL47Q9HD33 250 aaKnown RBP13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 SOHLH2Q9NX45 425 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 TRIM10Q9UDY6 481 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 MYO6Q9UM54 1294 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 DOCK10Q96BY6 2186 aa13.88□□□□□ -0.19
PRPF40A-211ENST00000493468 MTORP42345 2549 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 PKDREJQ9NTG1 2253 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 TACC2O95359 2948 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 DCHS2Q6V1P9 2916 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 F5H423 210 aaPredicted RBP13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 ZG16O60844 167 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 MYBL1P10243 752 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 MTHFD1P11586 935 aaKnown RBP13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 HNRNPH3P31942 346 aaKnown RBP13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 PTGER4P35408 488 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 CD86P42081 329 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 GLRBP48167 497 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 KPNA2P52292 529 aaKnown RBP13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 SLC25A11Q02978 314 aaKnown RBP13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 TMEM115Q12893 351 aaPredicted RBP13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 GTF2H3Q13889 308 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 SSPNQ14714 243 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 ZNF385CQ66K41 422 aaPredicted RBP13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 NCBP2-AS2Q69YL0 99 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 TXNRD3NBQ6F5E7 133 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 GDF7Q7Z4P5 450 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 AMZ2Q86W34 360 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 ZNF653Q96CK0 615 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 TRIM11Q96F44 468 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 TRIB3Q96RU7 358 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 C17orf62Q9BQA9 187 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 TMPRSS11EQ9UL52 423 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 OSGIN2Q9Y236 505 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 ZNF711Q9Y462 761 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 DNMT3AQ9Y6K1 912 aaPredicted RBP13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 CNTRLQ7Z7A1 2325 aa13.87□□□□□ -0.19
PRPF40A-211ENST00000493468 A0A1B0GUH1 482 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 MATN2O00339 956 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 KLF7O75840 302 aaPredicted RBP13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 FTLP02792 175 aaPredicted RBP13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 STSP08842 583 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 HBQ1P09105 142 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 BPIP17213 487 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 CYP2A7P20853 494 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 OTX2P32243 289 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 CA5AP35218 305 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 GALNT3Q14435 633 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 PIGHQ14442 188 aaPredicted RBP13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 KRT81Q14533 505 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 LLGL1Q15334 1064 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 CCDC122Q5T0U0 273 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 CCDC183Q5T5S1 534 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 ARMC6Q6NXE6 501 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 SPOCD1Q6ZMY3 1216 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 NIPA2Q8N8Q9 360 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 OR1L3Q8NH93 324 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 DTX3LQ8TDB6 740 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 PPP4R1Q8TF05 950 aa13.86□□□□□ -0.19
PRPF40A-211ENST00000493468 AGAP3Q96P47 875 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms