RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 PGBD5Q8N414 524 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 ESX1Q8N693 406 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 GALNT11Q8NCW6 608 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 FNIP1Q8TF40 1166 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 NCSTNQ92542 709 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 KLHL29Q96CT2 875 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 SCRN2Q96FV2 425 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 PBKQ96KB5 322 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 MCEEQ96PE7 176 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 MCCC1Q96RQ3 725 aaPredicted RBP12.97□□□□□ -0.33
HDAC3-213ENST00000492506 ABCG8Q9H221 673 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 VPS16Q9H269 839 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 SARS2Q9NP81 518 aaKnown RBP12.97□□□□□ -0.33
HDAC3-213ENST00000492506 TLK1Q9UKI8 766 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 PHTF1Q9UMS5 762 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 NFS1Q9Y697 457 aa12.97□□□□□ -0.33
HDAC3-213ENST00000492506 ANKRD17O75179 2603 aaKnown RBP12.97□□□□□ -0.33
HDAC3-213ENST00000492506 SSU72P8A0A1W2PR75 194 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 A6NCN8 305 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 BHMG1C9JSJ3 638 aaPredicted RBP12.96□□□□□ -0.33
HDAC3-213ENST00000492506 DFFAO00273 331 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 EEF2KO00418 725 aaKnown RBP12.96□□□□□ -0.33
HDAC3-213ENST00000492506 POLR1CO15160 346 aaPredicted RBP12.96□□□□□ -0.33
HDAC3-213ENST00000492506 ZNF185O15231 689 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 CALB1P05937 261 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 PYGLP06737 847 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 ERCC2P18074 760 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 DLSTP36957 453 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 HSD17B3P37058 310 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 MSH2P43246 934 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 GPR1P46091 355 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 CARSP49589 748 aaKnown RBP12.96□□□□□ -0.33
HDAC3-213ENST00000492506 RENBPP51606 427 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 HHEXQ03014 270 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 LRP8Q14114 963 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 ERV3-1Q14264 604 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 FKBP15Q5T1M5 1219 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 FHL5Q5TD97 284 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 KIRREL3Q8IZU9 778 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 ARFGAP1Q8N6T3 406 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 ENDOVQ8N8Q3 282 aaKnown RBP12.96□□□□□ -0.33
HDAC3-213ENST00000492506 SSC4DQ8WTU2 575 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 PDCD6IPQ8WUM4 868 aaKnown RBP12.96□□□□□ -0.33
HDAC3-213ENST00000492506 DYDC1Q8WWB3 177 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 RNF31Q96EP0 1072 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 PGM2Q96G03 612 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 COX14Q96I36 57 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 ZNF317Q96PQ6 595 aaPredicted RBP12.96□□□□□ -0.33
HDAC3-213ENST00000492506 PEBP4Q96S96 227 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 RNPEPL1Q9HAU8 725 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 TAB2Q9NYJ8 693 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 TRIM10Q9UDY6 481 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 TBC1D29Q9UFV1 150 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 CD84Q9UIB8 345 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 AP4E1Q9UPM8 1137 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 LRCH1Q9Y2L9 728 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 PPIL1Q9Y3C6 166 aa12.96□□□□□ -0.33
HDAC3-213ENST00000492506 MN1Q10571 1320 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 DPPA5A6NC42 116 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 VPS4BO75351 444 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 ANKRD34CP0C6C1 535 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 CYP2A6P11509 494 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 CALB2P22676 271 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 PMS2P54278 862 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 EPHA4P54764 986 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 POLR2FP61218 127 aaKnown RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 BNIP1Q12981 228 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 NFATC2Q13469 925 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 TMCO4Q5TGY1 634 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 DNAJC24Q6P3W2 148 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 IYDQ6PHW0 289 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 RFX8Q6ZV50 586 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 CYP4V2Q6ZWL3 525 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 MARK2Q7KZI7 788 aaKnown RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 TAOK1Q7L7X3 1001 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 NLRP8Q86W28 1048 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 TRIM42Q8IWZ5 723 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 SCAMP4Q969E2 229 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 GFM2Q969S9 779 aaKnown RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 AP2M1Q96CW1 435 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 ZNF599Q96NL3 588 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 OLFM3Q96PB7 478 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 TMEM237Q96Q45 408 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 SMIM14Q96QK8 99 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 ERGIC2Q96RQ1 377 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 NUDCD1Q96RS6 583 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 KCTD15Q96SI1 283 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 AGAP2Q99490 1192 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 MMADHCQ9H3L0 296 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 DHX35Q9H5Z1 703 aaKnown RBP12.95□□□□□ -0.34
HDAC3-213ENST00000492506 NLRC4Q9NPP4 1024 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 KLHL3Q9UH77 587 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 CROTQ9UKG9 612 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 VPS4AQ9UN37 437 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 POLHQ9Y253 713 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 PCDHB3Q9Y5E6 796 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 PCDHA13Q9Y5I0 950 aa12.95□□□□□ -0.34
HDAC3-213ENST00000492506 DNAJC6O75061 913 aa12.94□□□□□ -0.34
HDAC3-213ENST00000492506 RFPL1O75677 317 aa12.94□□□□□ -0.34
HDAC3-213ENST00000492506 PGLSO95336 258 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms