RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 H7C4K7 107 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 ESR1P03372 595 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 GALTP07902 379 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 OR1D2P34982 312 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 PMS2P3Q13401 168 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 GTF2H2Q13888 395 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 GTF2H2CQ6P1K8 395 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 ABRAXAS1Q6UWZ7 409 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 LYSMD3Q7Z3D4 306 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 FAM81AQ8TBF8 368 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 ISOC1Q96CN7 298 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 SEZ6LQ9BYH1 1024 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 PTBP2Q9UKA9 531 aaKnown RBP17.69■□□□□ 0.42
VIM-206ENST00000487938 FCF1Q9Y324 198 aaKnown RBP17.69■□□□□ 0.42
VIM-206ENST00000487938 DHRS7Q9Y394 339 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 PKP3Q9Y446 797 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 SLC30A1Q9Y6M5 507 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 A0A1B0GVM2 712 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 TRIM64CA6NLI5 447 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 LSM1O15116 133 aaKnown RBP17.69■□□□□ 0.42
VIM-206ENST00000487938 STT3AP46977 705 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 HSPA7P48741 367 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 FAM151BQ6UXP7 276 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 ANKS3Q6ZW76 656 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 CARNMT1Q8N4J0 409 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 DTWD1Q8N5C7 304 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 OR6K2Q8NGY2 324 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 BHMTQ93088 406 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 C12orf43Q96C57 262 aaKnown RBP17.69■□□□□ 0.42
VIM-206ENST00000487938 CDK5RAP1Q96SZ6 601 aaKnown RBP17.69■□□□□ 0.42
VIM-206ENST00000487938 DCUN1D5Q9BTE7 237 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 BOCQ9BWV1 1114 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 CIPCQ9C0C6 399 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 NSUN3Q9H649 340 aaKnown RBP17.69■□□□□ 0.42
VIM-206ENST00000487938 IPPKQ9H8X2 491 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 SMPD4Q9NXE4 827 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 NUDT4Q9NZJ9 180 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 IL17CQ9P0M4 197 aa17.69■□□□□ 0.42
VIM-206ENST00000487938 MAGED1Q9Y5V3 778 aaPredicted RBP17.69■□□□□ 0.42
VIM-206ENST00000487938 ALDH1A1P00352 501 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 CD9P21926 228 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 GDF5P43026 501 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 RANBP1P43487 201 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 EMP3P54852 163 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 AARS2Q5JTZ9 985 aaKnown RBP17.68■□□□□ 0.42
VIM-206ENST00000487938 ADGRF1Q5T601 910 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 PTRHD1Q6GMV3 140 aaKnown RBP17.68■□□□□ 0.42
VIM-206ENST00000487938 SBSNQ6UWP8 590 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 MILR1Q7Z6M3 343 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 PATL1Q86TB9 770 aaKnown RBP17.68■□□□□ 0.42
VIM-206ENST00000487938 FAM126BQ8IXS8 530 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 CD320Q9NPF0 282 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 HEBP1Q9NRV9 189 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 LRFN2Q9ULH4 789 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 C2orf78A6NCI8 922 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 TMX2-CTNND1H3BSU7 103 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 FFAR3O14843 346 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 GPR42O15529 346 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 FFAR2O15552 330 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 NBNO60934 754 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 SLC2A4P14672 509 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 NFKBIAP25963 317 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 CACNG1Q06432 222 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 SMARCB1Q12824 385 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 DCTN2Q13561 401 aaKnown RBP17.68■□□□□ 0.42
VIM-206ENST00000487938 PCBP2Q15366 365 aaKnown RBP eCLIP17.68■□□□□ 0.42
VIM-206ENST00000487938 RIMKLAQ8IXN7 391 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 LRRC43Q8N309 656 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 DPP10Q8N608 796 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 CLDN19Q8N6F1 224 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 ADAMTS16Q8TE57 1224 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 CGREF1Q99674 301 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 BDH2Q9BUT1 245 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 NTN4Q9HB63 628 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 ELOVL2Q9NXB9 296 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 LHX3Q9UBR4 397 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 ZNF711Q9Y462 761 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 PCDHB3Q9Y5E6 796 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 ST14Q9Y5Y6 855 aa17.68■□□□□ 0.42
VIM-206ENST00000487938 H0Y626 953 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 H7C0S8 307 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 PRMT5O14744 637 aaPredicted RBP17.67■□□□□ 0.42
VIM-206ENST00000487938 FOXD2O60548 495 aaPredicted RBP17.67■□□□□ 0.42
VIM-206ENST00000487938 SEC24AO95486 1093 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 NPPAP01160 153 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 HMOX2P30519 316 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 GALK1P51570 392 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 CHST9Q7L1S5 443 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 LRRC8DQ7L1W4 858 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 LKAAEAR1Q8TD35 194 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 BPIFB1Q8TDL5 484 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 OSCP1Q8WVF1 389 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 PLD4Q96BZ4 506 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 CXorf21Q9HAI6 301 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 PRSS21Q9Y6M0 314 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 TRIM64A6NGJ6 449 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 TBKBP1A7MCY6 615 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 K7ERQ8 282 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 ANKRD28O15084 1053 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 TAPBPO15533 448 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms