RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SCN7AQ01118 1682 aa10.9□□□□□ -0.66
HDAC6-228ENST00000486227 ISM1B1AKI9 464 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 TIPRLO75663 272 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 UGT1A6P19224 532 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 UGT1A1P22309 533 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 UGT1A4P22310 534 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 GDI1P31150 447 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 UGT1A3P35503 534 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 UGT1A5P35504 534 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 RPIAP49247 311 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 PAQR3Q6TCH7 311 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 KRT78Q8N1N4 520 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 ZNF276Q8N554 614 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 WFIKKN2Q8TEU8 576 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 HPS1Q92902 700 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 CLP1Q92989 425 aaKnown RBP10.9□□□□□ -0.67
HDAC6-228ENST00000486227 HEPHQ9BQS7 1158 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 C6orf62Q9GZU0 229 aaPredicted RBP10.9□□□□□ -0.67
HDAC6-228ENST00000486227 FNIP2Q9P278 1114 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 PSME2Q9UL46 239 aa10.9□□□□□ -0.67
HDAC6-228ENST00000486227 SEC24AO95486 1093 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 GSTM1P09488 218 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 IRF5Q13568 498 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 ARMC4Q5T2S8 1044 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 TP53INP2Q8IXH6 220 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 STARD8Q92502 1023 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 SHDQ96IW2 340 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 OR52E6Q96RD3 313 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 GULP1Q9UBP9 304 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 PGAP2Q9UHJ9 254 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 EIF2B4Q9UI10 523 aaKnown RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 CNPP09543 421 aaKnown RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 ALPIP09923 528 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 ACADVLP49748 655 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 SEC13P55735 322 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 RALGDSQ12967 914 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 AAK1Q2M2I8 961 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 UTP15Q8TED0 518 aaKnown RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 LPGAT1Q92604 370 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 BADQ92934 168 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 IL23AQ9NPF7 189 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 ZNF490Q9ULM2 529 aaPredicted RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 COL22A1Q8NFW1 1626 aaPredicted RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 H3BM21 787 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 LSM1O15116 133 aaKnown RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 NIPSNAP2O75323 286 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 OR4F21O95013 312 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 ITGB1P05556 798 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 ALOX12P18054 663 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 DDX6P26196 483 aaKnown RBP eCLIP10.89□□□□□ -0.676e-6■■■■□ 19.3
HDAC6-228ENST00000486227 CRATP43155 626 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 NRG1Q02297 640 aaPredicted RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 SPANXN2Q5MJ10 180 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 RBM20Q5T481 1227 aaKnown RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 DEPDC1Q5TB30 811 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 PHYKPLQ8IUZ5 450 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 CMTM8Q8IZV2 173 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 OR8H2Q8N162 312 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 IGSF21Q96ID5 467 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 APOLD1Q96LR9 279 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 CDV3Q9UKY7 258 aaKnown RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 GPC6Q9Y625 555 aaPredicted RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 MYH7BA7E2Y1 1941 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 H3BSA7 217 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 SLC22A2O15244 555 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 SGTAO43765 313 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 ITGAXP20702 1163 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 AFF1P51825 1210 aaKnown RBP10.89□□□□□ -0.67
HDAC6-228ENST00000486227 NAE1Q13564 534 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 SPIDRQ14159 915 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 VPS26BQ4G0F5 336 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 OR52E8Q6IFG1 317 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 C17orf50Q8WW18 174 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 PPM1MQ96MI6 270 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 DEPDC7Q96QD5 511 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 COQ7Q99807 217 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 APOL4Q9BPW4 351 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 TMLHEQ9NVH6 421 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 ADPRHL2Q9NX46 363 aa10.89□□□□□ -0.67
HDAC6-228ENST00000486227 A0A0D9SEW6 157 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 DCLK1O15075 740 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 NDUFB5O43674 189 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 FAM20BO75063 409 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 RECQL5O94762 991 aaPredicted RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 GJB5O95377 273 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 SOD2P04179 222 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 TLX1P31314 330 aaPredicted RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 GNPDA1P46926 289 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 CDK9P50750 372 aaKnown RBP10.88□□□□□ -0.67
HDAC6-228ENST00000486227 PRKAG1P54619 331 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 PDGFRLQ15198 375 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 TEAD4Q15561 434 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 ATAD3BQ5T9A4 648 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 GALNT18Q6P9A2 607 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 NAPRTQ6XQN6 538 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 SLC39A5Q6ZMH5 540 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 LRRTM3Q86VH5 581 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 CYP4Z1Q86W10 505 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 OR2T34Q8NGX1 318 aa10.88□□□□□ -0.67
HDAC6-228ENST00000486227 OR2T3Q8NH03 318 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms