RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	CPNE5	Q9HCH3	593 aa		11.31	□□□□□ -0.6
CPNE1-222	ENST00000473373	HOMER3	Q9NSC5	361 aa		11.31	□□□□□ -0.6
CPNE1-222	ENST00000473373	NLE1	Q9NVX2	485 aa	Predicted RBP	11.31	□□□□□ -0.6
CPNE1-222	ENST00000473373	SMARCAL1	Q9NZC9	954 aa		11.31	□□□□□ -0.6
CPNE1-222	ENST00000473373	SCHIP1	Q9P0W5	487 aa	Predicted RBP	11.31	□□□□□ -0.6
CPNE1-222	ENST00000473373	CFAP20	Q9Y6A4	193 aa	Known RBP	11.31	□□□□□ -0.6
CPNE1-222	ENST00000473373	KALRN	O60229	2985 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ASH1L	Q9NR48	2969 aa	Known RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	KLHL33	A6NCF5	533 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373		A6NCN8	305 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	MGAT4D	A6NG13	374 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	IFRD1	O00458	451 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	GAPDHS	O14556	408 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	NVL	O15381	856 aa	Known RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	LDB2	O43679	373 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	LIPC	P11150	499 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	CCL4	P13236	92 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ATP1B2	P14415	290 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	PPARG	P37231	505 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	VPS41	P49754	854 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	SEPHS1	P49903	392 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	RAB15	P59190	212 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	GPR18	Q14330	331 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	CLCA4	Q14CN2	919 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	OASL	Q15646	514 aa	Known RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	CCNG2	Q16589	344 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	SYTL3	Q4VX76	610 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	DCAF12	Q5T6F0	453 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	AGAP9	Q5VTM2	703 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	KCTD11	Q693B1	232 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	DENND5A	Q6IQ26	1287 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	WDR74	Q6RFH5	385 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ABRAXAS1	Q6UWZ7	409 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	C4orf22	Q6V702	233 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ZNF574	Q6ZN55	896 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ZNF662	Q6ZS27	426 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	PRUNE1	Q86TP1	453 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	SERPINA9	Q86WD7	417 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	IL22RA1	Q8N6P7	574 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	OR6P1	Q8NGX9	317 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	JPH3	Q8WXH2	748 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	NAP1L3	Q99457	506 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ZDHHC3	Q9NYG2	299 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ZNF624	Q9P2J8	865 aa	Predicted RBP	11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ACSL5	Q9ULC5	683 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	ZKSCAN5	Q9Y2L8	839 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	PCDHGA7	Q9Y5G6	932 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	COLEC10	Q9Y6Z7	277 aa		11.3	□□□□□ -0.6
CPNE1-222	ENST00000473373	PTPRQ	Q9UMZ3	2332 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	STMND1	H3BQB6	276 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	CAPN5	O15484	640 aa	Predicted RBP	11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	KIF5C	O60282	957 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	ZSCAN5DP	P0CG00	497 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	ACRV1	P26436	265 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	CD82	P27701	267 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	SESN2	P58004	480 aa	Predicted RBP	11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	UBE2I	P63279	158 aa	Known RBP	11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	SARNP	P82979	210 aa	Known RBP	11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	XIAP	P98170	497 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	DMPK	Q09013	629 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	PRKAA1	Q13131	559 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	RPE65	Q16518	533 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	FASTKD1	Q53R41	847 aa	Known RBP	11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	CACHD1	Q5VU97	1274 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	AFTPH	Q6ULP2	937 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	CEACAM20	Q6UY09	585 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	WASH2P	Q6VEQ5	465 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	FAM92B	Q6ZTR7	304 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	C11orf96	Q7Z7L8	435 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	ZFAND4	Q86XD8	727 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	OR2L2	Q8NH16	312 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	HM13	Q8TCT9	377 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	RTP4	Q96DX8	246 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	ZDHHC12	Q96GR4	267 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	CDKN2AIPNL	Q96HQ2	116 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	FERD3L	Q96RJ6	166 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	CCNL2	Q96S94	520 aa	Predicted RBP	11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	ASPSCR1	Q9BZE9	553 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	WASH6P	Q9NQA3	447 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	OCIAD1	Q9NX40	245 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	TRMT1	Q9NXH9	659 aa	Known RBP	11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	FOXJ2	Q9P0K8	574 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	WDR37	Q9Y2I8	494 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	JRKL	Q9Y4A0	524 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	HEBP2	Q9Y5Z4	205 aa		11.29	□□□□□ -0.6
CPNE1-222	ENST00000473373	TENM4	Q6N022	2769 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	GOLGA6L10	A0A0M3HER8	536 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	TEX51	A0A1B0GUA7	166 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	UBA6	A0AVT1	1052 aa	Predicted RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	AP3B1	O00203	1094 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	QSOX1	O00391	747 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	FTH1	P02794	183 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	FGF3	P11487	239 aa	Predicted RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	MTHFD1	P11586	935 aa	Known RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	BRAF	P15056	766 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	ADRA1D	P25100	572 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	CA5A	P35218	305 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	KCNJ1	P48048	391 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	PRLHR	P49683	370 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	CDKN1C	P49918	316 aa	Predicted RBP	11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms