RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TCF7L1Q9HCS4 588 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SCP2D1Q9UJQ7 156 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 CDH10Q9Y6N8 788 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 TBX1O43435 398 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 CDC25CP30307 473 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 RGS8P57771 180 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 CYP1B1Q16678 543 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 REP15Q6BDI9 236 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 HAGHLQ6PII5 290 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 C1orf186Q6ZWK4 172 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ZBED6CLQ96FA7 236 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 PRICKLE1Q96MT3 831 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SLC4A9Q96Q91 983 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 IRF2BPLQ9H1B7 796 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SHPRHQ149N8 1683 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 F8VP50 259 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 KRT33AO76009 404 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SLITRK3O94933 977 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 C8GP07360 202 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 THOP1P52888 689 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 GBX2P52951 348 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 GXYLT1Q4G148 440 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ZNF767PQ75MW2 155 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 FAM35AQ86V20 835 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 KLHL6Q8WZ60 621 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ZSWIM3Q96MP5 696 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 PCDHB16Q9NRJ7 776 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 RDH8Q9NYR8 311 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 PMF1-BGLAPU3KQ54 211 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SNRNP200O75643 2136 aaKnown RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 LINC00032P0C843 101 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 MMP8P22894 467 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 RFX5P48382 616 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 DCDC1P59894 354 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 TWIST2Q8WVJ9 160 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 TCEAL3Q969E4 200 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 DCSTAMPQ9H295 470 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SDK1Q7Z5N4 2213 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 PORP16435 677 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 KELP23276 732 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 CTBP2P56545 445 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ARMC10Q8N2F6 343 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 NCSTNQ92542 709 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 H3BRB1 525 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ZNF423Q2M1K9 1284 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ASTE1Q2TB18 679 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ABCA11PQ4W5N1 156 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 C7orf57Q8NEG2 295 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 SIPA1Q96FS4 1042 aa13.16□□□□□ -0.3
COL6A3-209ENST00000472056 RIOK2Q9BVS4 552 aaKnown RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 TUT1Q9H6E5 874 aaKnown RBP13.16□□□□□ -0.3
COL6A3-209ENST00000472056 ZNF318Q5VUA4 2279 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 COL1A2P08123 1366 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 AOC1P19801 751 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 TATDN1Q6P1N9 297 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 LRRC70Q7Z2Q7 622 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 REPS2Q8NFH8 660 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 SMG7Q92540 1137 aaKnown RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 FTHL17Q9BXU8 183 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 GPRC5CQ9NQ84 441 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 SPATA7Q9P0W8 599 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 C1QTNF3-AMACRE9PGA6 284 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 TDGQ13569 410 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 DEFB106AQ8N104 65 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 TSPEARQ8WU66 669 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 ELMO3Q96BJ8 720 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 POLR3HQ9Y535 204 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 DLGAP1O14490 977 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 KDM4BO94953 1096 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 PGDP52209 483 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 DNM1P34Q6PK57 102 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 SAPCD2Q86UD0 394 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 TRPM4Q8TD43 1214 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 MYOZ2Q9NPC6 264 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 HPF1Q9NWY4 346 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 ZIM2Q9NZV7 527 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 PABPC4LP0CB38 370 aaKnown RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 EEFSECP57772 596 aaKnown RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 TFAP2DQ7Z6R9 452 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 NEK7Q8TDX7 302 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 COPS8Q99627 209 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 ADAMTS10Q9H324 1103 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 ACTR3BQ9P1U1 418 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 FKBP7Q9Y680 259 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 RPP40O75818 363 aaKnown RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 POMCP01189 267 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 CD36P16671 472 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 S100PP25815 95 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 NCCRP1Q6ZVX7 275 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 LRRN4CLQ8ND94 238 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 PURBQ96QR8 312 aaKnown RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 OR1I1O60431 355 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 HOXD8P13378 290 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-209ENST00000472056 KHKP50053 298 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 CDKL1Q00532 357 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 ITPAQ9BY32 194 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 TNFSF13BQ9Y275 285 aa13.15□□□□□ -0.3
COL6A3-209ENST00000472056 ADGRB1O14514 1584 aa13.15□□□□□ -0.31
COL6A3-209ENST00000472056 MAGEB17A8MXT2 336 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms