RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CD274Q9NZQ7 290 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 PPT2Q9UMR5 302 aa5.29□□□□□ -1.56
SYNE1-220ENST00000471834 LCHNA4D1U4 455 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 AXIN1O15169 862 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 RHOBTB1O94844 696 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 CHEK2O96017 543 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 HSPA8P11142 646 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ERCC2P18074 760 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 HLA-DMAP28067 261 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 RBP5P82980 135 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 STXBP2Q15833 593 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 C15orf59Q2T9L4 293 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 SMTNL2Q2TAL5 461 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 RUNDC3AQ59EK9 446 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TWF2Q6IBS0 349 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ZC3H14Q6PJT7 736 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM26Q6ZUK4 368 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 KCTD8Q6ZWB6 473 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TRIM46Q7Z4K8 759 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 PPHLN1Q8NEY8 458 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 CYGBQ8WWM9 190 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 SLC7A6Q92536 515 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 RNPEPQ9H4A4 650 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 CARS2Q9HA77 564 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ABI2Q9NYB9 513 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 MRPS17Q9Y2R5 130 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 IQCMA0A1B0GVH7 501 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 KCNU1A8MYU2 1149 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 MICAL2O94851 1124 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TCF3P15923 654 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 PPP3CCP48454 512 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 BCAT1P54687 386 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ERVK-8P63133 956 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 PIK3R6Q5UE93 754 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 BPHLQ86WA6 291 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 COLGALT1Q8NBJ5 622 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 GTF2H4Q92759 462 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 LRRC58Q96CX6 371 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ERLEC1Q96DZ1 483 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TRIB3Q96RU7 358 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 LGMNQ99538 433 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM79Q9BSE2 394 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 EML4Q9HC35 981 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 CDYLQ9Y232 598 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 SLC27A5Q9Y2P5 690 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 N6AMT1Q9Y5N5 214 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ERN1O75460 977 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 OXSR1O95747 527 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 CPB1P15086 417 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TFE3P19532 575 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 HOXA11P31270 313 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ARPC4P59998 168 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 MMRN1Q13201 1228 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 GLYR1Q49A26 553 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 FAM102AQ5T9C2 384 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 PNCKQ6P2M8 343 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 PROSER1Q86XN7 944 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ZC3H7AQ8IWR0 971 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ZSCAN1Q8NBB4 408 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 SMG7Q92540 1137 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 USP7Q93009 1102 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 TESCQ96BS2 214 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 THAP11Q96EK4 314 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 C17orf80Q9BSJ5 609 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 CHID1Q9BWS9 393 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 DHX35Q9H5Z1 703 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF556Q9HAH1 456 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 DCAF13Q9NV06 445 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 NFKBIL1Q9UBC1 381 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 AURKCQ9UQB9 309 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 PDE10AQ9Y233 779 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 LINC00862A6NCI5 91 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 PEX14O75381 377 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 UPK1BO75841 260 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 SNAP29O95721 258 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ALPPP05187 535 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ITGA2P17301 1181 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 HLA-DPA1P20036 260 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 RPS12P25398 132 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 DAOAP59103 153 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 FAM209AQ5JX71 171 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 CATSPER4Q7RTX7 472 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 CYP4Z1Q86W10 505 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 MICALL2Q8IY33 904 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ZFP90Q8TF47 636 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 HEXDCQ8WVB3 486 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 OR2B2Q9GZK3 357 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 SIK2Q9H0K1 926 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 NOL11Q9H8H0 719 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 MRPL39Q9NYK5 338 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 V9GYQ6 96 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 GRAP2O75791 330 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 C1RP00736 705 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 IQCF3P0C7M6 154 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 ATXN1LP0C7T5 689 aaKnown RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 LBPP18428 481 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 GALP22466 123 aa5.28□□□□□ -1.56
SYNE1-220ENST00000471834 MLLT3P42568 568 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-220ENST00000471834 GALK2Q01415 458 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms