RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FGF5P12034 268 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 ZNF28P17035 718 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 NELFEP18615 380 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 CTNNA2P26232 953 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 PSMB4P28070 264 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 PBLDP30039 288 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 AKT1P31749 480 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 EIF3EP60228 445 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 PRPSAP1Q14558 356 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 FNBP1LQ5T0N5 605 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 METRNLQ641Q3 311 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 CYB5D1Q6P9G0 228 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 KLHL35Q6PF15 583 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 C6orf15Q6UXA7 325 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 TMTC1Q8IUR5 882 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 RASGRP3Q8IV61 690 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 OR4K2Q8NGD2 314 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 STARD8Q92502 1023 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 UBXN4Q92575 508 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 FKBPLQ9UIM3 349 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 DOPEY2Q9Y3R5 2298 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 BOD1L1Q8NFC6 3051 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 GOLGA6L3A6NEY3 463 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 MGAT4DA6NG13 374 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 KCNN4O15554 427 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 SRP72O76094 671 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 STK10O94804 968 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 KIAA0754O94854 1291 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 IPO7O95373 1038 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 MTHFD1P11586 935 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 TCN2P20062 427 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 OAS2P29728 719 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 CETN2P41208 172 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 NAP1L1P55209 391 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 RWDD2BP57060 319 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 PPP1CAP62136 330 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 PDE1BQ01064 536 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 DARS2Q6PI48 645 aaKnown RBP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 DET1Q7L5Y6 550 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 LURAP1LQ8IV03 231 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 BEND7Q8N7W2 519 aaPredicted RBP16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 GALNT6Q8NCL4 622 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 MRFAP1L1Q96HT8 127 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 SPATA13Q96N96 652 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 PPP1R2P1Q96PQ5 205 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 APOL2Q9BQE5 337 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 ASB8Q9H765 288 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 ACSL5Q9ULC5 683 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 KCTD3Q9Y597 815 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 DUSP10Q9Y6W6 482 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 BSNQ9UPA5 3926 aa16.21■□□□□ 0.19
CCDC28B-204ENST00000469003 UBR5O95071 2799 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 AGAP14A8MT82 685 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 SPAG6O75602 509 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 ZNF189O75820 626 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 TJP3O95049 919 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 CRTAMO95727 393 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 F8A1P23610 371 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 ZNF75DP51815 510 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 XIAPP98170 497 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 MSLNQ13421 630 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 OLIG2Q13516 323 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 PLCL1Q15111 1095 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 BCL7AQ4VC05 210 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 PPP1R3BQ86XI6 285 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 SIDT2Q8NBJ9 832 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 OR2L2Q8NH16 312 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 CCDC110Q8TBZ0 833 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 ZFPM2Q8WW38 1151 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 STAMBPL1Q96FJ0 436 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 ELMO2Q96JJ3 720 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 SLC41A2Q96JW4 573 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 LINC00615Q96LM1 132 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 INSM2Q96T92 566 aaPredicted RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 CD180Q99467 661 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 FAM118BQ9BPY3 351 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 C19orf43Q9BQ61 176 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 TRIM4Q9C037 500 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 WWP1Q9H0M0 922 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 PDE7BQ9NP56 450 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 IMP3Q9NV31 184 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 CROTQ9UKG9 612 aa16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 REXO2Q9Y3B8 237 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 MRPS18BQ9Y676 258 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 CFAP20Q9Y6A4 193 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 TLN1Q9Y490 2541 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-204ENST00000469003 IGHV5-51A0A0C4DH38 117 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 OR5K3A6NET4 321 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 MT-ND3P03897 115 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 PYGMP11217 842 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 DLSTP36957 453 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 ZNF140P52738 457 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 DEFB109BQ30KR1 87 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 DENND5AQ6IQ26 1287 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 C16orf46Q6P387 395 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 RAD9BQ6WBX8 426 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 KMT5CQ86Y97 462 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 KLHDC8BQ8IXV7 354 aa16.19■□□□□ 0.18
CCDC28B-204ENST00000469003 LRRC57Q8N9N7 239 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms