RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TCAIMQ8N3R3 496 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 IL17RCQ8NAC3 791 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CCDC150Q8NCX0 1101 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ZNF548Q8NEK5 533 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 OR6S1Q8NH40 331 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CLHC1Q8NHS4 586 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ST7LQ8TDW4 575 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 RSC1A1Q92681 617 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 RBM17Q96I25 401 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 TPD52L3Q96J77 140 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 SAMD8Q96LT4 415 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CFAP57Q96MR6 1250 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ZBTB18Q99592 522 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 MTG1Q9BT17 334 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ADGRE3Q9BY15 652 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 KRTAP2-2Q9BYT5 123 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 DPH1Q9BZG8 443 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 TSGA10Q9BZW7 698 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 RAB33BQ9H082 229 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ADNPQ9H2P0 1102 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 UCK1Q9HA47 277 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 NGBQ9NPG2 151 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 POT1Q9NUX5 634 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 MGAT4CQ9UBM8 478 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 HEY2Q9UBP5 337 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ARMCX3Q9UH62 379 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 LIMA1Q9UHB6 759 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CNOT7Q9UIV1 285 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CDH7Q9ULB5 785 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CAPN11Q9UMQ6 739 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 STX8Q9UNK0 236 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 NUDCQ9Y266 331 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 MRPS2Q9Y399 296 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CBY1Q9Y3M2 126 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 LRP12Q9Y561 859 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CDY1Q9Y6F8 540 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 KCNE2Q9Y6J6 123 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 SBNO1A3KN83 1393 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CGNL1Q0VF96 1302 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PHLPP2Q6ZVD8 1323 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CYP3A7-CYP3A51PA0A087WV96 503 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 C15orf38-AP3S2A0A0A6YYH1 394 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 LOC100506127A0A0U1RQW1 187 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 C5orf51A6NDU8 294 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 FAM90A10PA6NDY2 464 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ZNF716A6NP11 495 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 H7C4K7 107 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC33A1O00400 549 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PCDH17O14917 1159 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 BCAT2O15382 392 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 MED7O43513 233 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SPRY2O43597 315 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 KRT86O43790 486 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CRTAPO75718 401 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 OR5F1O95221 314 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 VNN2O95498 520 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 GLP2RO95838 553 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 TFRCP02786 760 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 KRT6BP04259 564 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ALPLP05186 524 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ASNSP08243 561 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ZNF735P0CB33 412 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 HSPA8P11142 646 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 EGR1P18146 543 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CYP2A7P20853 494 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 AGAP20933 346 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 HNRNPA2B1P22626 353 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CYP3A7P24462 503 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 U2AF2P26368 475 aaKnown RBP eCLIP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ANXA13P27216 316 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PSMA5P28066 241 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 EPHA3P29320 983 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CCND2P30279 289 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 UQCRC1P31930 480 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PRKCIP41743 596 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 KRT6CP48668 564 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CLCNKBP51801 687 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CAPZA1P52907 286 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 OAZ1P54368 228 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 NAGLUP54802 743 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 TAS2R40P59535 323 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 OTUD4Q01804 1114 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 ZRSR1Q15695 479 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 NFIL3Q16649 462 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC9B1Q4ZJI4 515 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 MIDNQ504T8 468 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 PRAMEF20Q5VT98 475 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 KIAA1161Q6NSJ0 714 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 DEGS2Q6QHC5 323 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 KDM7AQ6ZMT4 941 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 RBPMS2Q6ZRY4 209 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 KIAA0408Q6ZU52 694 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 C1orf186Q6ZWK4 172 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 SPATA19Q7Z5L4 167 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 AMZ2Q86W34 360 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 NUDT13Q86X67 352 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 LSMEM2Q8N112 164 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 OR2T34Q8NGX1 318 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 AKR7LQ8NHP1 331 aa4.8□□□□□ -1.64
CCDC88A-210ENST00000468534 CDC26Q8NHZ8 85 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms