RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 LINC00615Q96LM1 132 aaPredicted RBP11.43□□□□□ -0.58
CUX1-207ENST00000465461 INSM2Q96T92 566 aaPredicted RBP11.43□□□□□ -0.58
CUX1-207ENST00000465461 SLC38A3Q99624 504 aa11.43□□□□□ -0.58
CUX1-207ENST00000465461 EBNA1BP2Q99848 306 aaKnown RBP11.43□□□□□ -0.58
CUX1-207ENST00000465461 FOXP3Q9BZS1 431 aa11.43□□□□□ -0.58
CUX1-207ENST00000465461 COG4Q9H9E3 785 aa11.43□□□□□ -0.58
CUX1-207ENST00000465461 PLAC1Q9HBJ0 212 aa11.43□□□□□ -0.58
CUX1-207ENST00000465461 C20orf96Q9NUD7 363 aaPredicted RBP11.43□□□□□ -0.58
CUX1-207ENST00000465461 GRHL1Q9NZI5 618 aa11.43□□□□□ -0.58
CUX1-207ENST00000465461 CHMP2BQ9UQN3 213 aa11.43□□□□□ -0.58
CUX1-207ENST00000465461 CRYL1Q9Y2S2 319 aa11.43□□□□□ -0.58
CUX1-207ENST00000465461 PCDHB1Q9Y5F3 818 aa11.43□□□□□ -0.58
CUX1-207ENST00000465461 KIR2DS5A0A0G2JLQ3 304 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 A0A0G2JNG1 304 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 UBA6A0AVT1 1052 aaPredicted RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 ESYT3A0FGR9 886 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 PMS2P1A4D2B8 440 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 C1QTNF9BB2RNN3 333 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 KIR2DS3K7RE56 304 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 KIF2AO00139 706 aaPredicted RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 NTN3O00634 580 aaPredicted RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 CSO75390 466 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 AP2A2O94973 939 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 VIPP01282 170 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 C1QTNF9P0C862 333 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 ERVK-10P10266 1014 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 CDK4P11802 303 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 HOXB3P14651 431 aaPredicted RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 PNLIPP16233 465 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 PGAM1P18669 254 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 XRCC1P18887 633 aaPredicted RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 PAMP19021 973 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 CD1CP29017 333 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 FMO4P31512 558 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 CCR7P32248 378 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 FASLGP48023 281 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 PDX1P52945 283 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 EIF3BP55884 814 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 UBE2IP63279 158 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 SHC2P98077 582 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 CFHR1Q03591 330 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 PDIA2Q13087 525 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 THOC5Q13769 683 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 SPIDRQ14159 915 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 KIR2DS5Q14953 304 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 HIF1AQ16665 826 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 LONRF1Q17RB8 773 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 ZNF658BQ4V348 819 aaPredicted RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 DNAJC21Q5F1R6 531 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 AGAP9Q5VTM2 703 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 NEPROQ6NW34 567 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 CERS6Q6ZMG9 384 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 CENPUQ71F23 418 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 ZNF438Q7Z4V0 828 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 TRIM48Q8IWZ4 208 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.42□□□□□ -0.58
CUX1-207ENST00000465461 PHC3Q8NDX5 983 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 OR6C4Q8NGE1 309 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 FAM136AQ96C01 138 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 CXorf40BQ96DE9 158 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 RMDN2Q96LZ7 410 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 C12orf66Q96MD2 445 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 GFM1Q96RP9 751 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 TTC1Q99614 292 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 NRTNQ99748 197 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 NUDT22Q9BRQ3 303 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 P2RY12Q9H244 342 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 SARS2Q9NP81 518 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 FBXO6Q9NRD1 293 aaPredicted RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 IARS2Q9NSE4 1012 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 IMP3Q9NV31 184 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 KCNK4Q9NYG8 393 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 TMEM9Q9P0T7 183 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 SLC17A6Q9P2U8 582 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 UTP11Q9Y3A2 253 aaKnown RBP11.42□□□□□ -0.58
CUX1-207ENST00000465461 MSRB2Q9Y3D2 182 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 NEUROG3Q9Y4Z2 214 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 FAM169AQ9Y6X4 670 aa11.42□□□□□ -0.58
CUX1-207ENST00000465461 IGHV1OR21-1A0A087WYE8 117 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 FAM221BA6H8Z2 402 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 OR5K4A6NMS3 321 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 KCNJ13O60928 360 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 TUBB4AP04350 444 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 OR56A5P0C7T3 313 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 SLC2A4P14672 509 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 TYRP1P17643 537 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 CSF2RBP32927 897 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 HALP42357 657 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 TTPAP49638 278 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 PLTPP55058 493 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 ARL4CP56559 192 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 MPP1Q00013 466 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 CAMK2BQ13554 666 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 BOP1Q14137 746 aaKnown RBP11.41□□□□□ -0.58
CUX1-207ENST00000465461 GPR18Q14330 331 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 CRYMQ14894 314 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 NR1D2Q14995 579 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 ISXQ2M1V0 245 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 HSP90AA5PQ58FG0 334 aa11.41□□□□□ -0.58
CUX1-207ENST00000465461 AARS2Q5JTZ9 985 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms