RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 TUBB3Q13509 450 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 NAA25Q14CX7 972 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 SPRED3Q2MJR0 410 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 KIF19Q2TAC6 998 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 MMEL1Q495T6 779 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 LRRC73Q5JTD7 316 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 HENMT1Q5T8I9 393 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 VWA5B1Q5TIE3 1220 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 LRRC70Q7Z2Q7 622 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 MILR1Q7Z6M3 343 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 FAM9CQ8IZT9 166 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 CLDN19Q8N6F1 224 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 ZNF366Q8N895 744 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 PNPLA1Q8N8W4 532 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 SNX31Q8N9S9 440 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 GIMAP7Q8NHV1 300 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 TWIST2Q8WVJ9 160 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 TUBGCP3Q96CW5 907 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 MSANTD3Q96H12 275 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 COQ10AQ96MF6 247 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 WRAP53Q9BUR4 548 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 TMEM245Q9H330 911 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 MTG2Q9H4K7 406 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 WDR55Q9H6Y2 383 aaPredicted RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 EFCAB1Q9HAE3 211 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 PARVBQ9HBI1 364 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 SEMA4BQ9NPR2 832 aaPredicted RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 ARL15Q9NXU5 204 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 EPS15L1Q9UBC2 864 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 EIF2B4Q9UI10 523 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 TSR3Q9UJK0 312 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 PCTPQ9UKL6 214 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 PRSS21Q9Y6M0 314 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 K7EPI3 171 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 SLC28A1O00337 649 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 LIN7AO14910 233 aaPredicted RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 AP1G1O43747 822 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 VEGFDO43915 354 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 CCNT2O60583 730 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 STK16O75716 305 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 TSPAN12O95859 305 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 KRT6AP02538 564 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 KRT6BP04259 564 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 CTSLP07711 333 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 KRT16P08779 473 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 T-ENOLP0DO92 83 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 MTHFD2P13995 350 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 EPB42P16452 691 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 ARRB2P32121 409 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 KRT6CP48668 564 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 HSPA14Q0VDF9 509 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 GTF2H2Q13888 395 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 GSTA3Q16772 222 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 CTC1Q2NKJ3 1217 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 TRMT5Q32P41 509 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 POM121L1PQ3SYA9 428 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 KANK2Q63ZY3 851 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 GTF2H2CQ6P1K8 395 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 MAVSQ7Z434 540 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 MMAAQ8IVH4 418 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 PLCD3Q8N3E9 789 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 ZNF513Q8N8E2 541 aaPredicted RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 AGAP11Q8TF27 550 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 SLC7A6OSQ96CW6 309 aaPredicted RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 MAELQ96JY0 434 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 OR52B2Q96RD2 323 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 ZBTB18Q99592 522 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 SLC25A23Q9BV35 468 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 MRPL1Q9BYD6 325 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 SLC29A3Q9BZD2 475 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 PRSS16Q9NQE7 514 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 PRPF19Q9UMS4 504 aaKnown RBP5.93□□□□□ -1.46
VPS50-205ENST00000441602 NCKAP1Q9Y2A7 1128 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 UTRNP46939 3433 aa5.93□□□□□ -1.46
VPS50-205ENST00000441602 A0A0U1RQS6 177 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 BBIP1A8MTZ0 92 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 PSMD12O00232 456 aaPredicted RBP5.92□□□□□ -1.46
VPS50-205ENST00000441602 AREL1O15033 823 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 GSC2O15499 205 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 RECQL5O94762 991 aaPredicted RBP5.92□□□□□ -1.46
VPS50-205ENST00000441602 PCDH8O95206 1070 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 SIX3O95343 332 aaPredicted RBP5.92□□□□□ -1.46
VPS50-205ENST00000441602 DNTTP04053 509 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 IL12RB1P42701 662 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 CPA2P48052 419 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 FASTKQ14296 549 aaKnown RBP5.92□□□□□ -1.46
VPS50-205ENST00000441602 CCDC6Q16204 474 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 GAB4Q2WGN9 574 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 MAP7D1Q3KQU3 841 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 DET1Q7L5Y6 550 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 SNX32Q86XE0 403 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 SCUBE1Q8IWY4 988 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 KYQ8NBH2 561 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 PCYOX1LQ8NBM8 494 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 OR2T3Q8NH03 318 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 CFAP61Q8NHU2 1237 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 METTL6Q8TCB7 284 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 MAPK15Q8TD08 544 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 MAGEC3Q8TD91 643 aa5.92□□□□□ -1.46
VPS50-205ENST00000441602 SCAMP4Q969E2 229 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms