RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 IFT27Q9BW83 186 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ABCG4Q9H172 646 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 MINPP1Q9UNW1 487 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 TBC1D3BA6NDS4 549 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ITGA5P08648 1049 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 RRP1BQ14684 758 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 HID1Q8IV36 788 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 GPR135Q8IZ08 494 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ZSCAN4Q8NAM6 433 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ERLEC1Q96DZ1 483 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 UCK2Q9BZX2 261 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 GDF3Q9NR23 364 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 SEC14L4Q9UDX3 406 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 NRKQ7Z2Y5 1582 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 TRAV19A0A0A6YYK7 116 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ELOVL7A1L3X0 281 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 CARNS1A5YM72 827 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 C1QTNF3-AMACRE9PGA6 284 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 FBP2O00757 339 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 BNIP1Q12981 228 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 CLEC17AQ6ZS10 378 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ABRAQ8N0Z2 381 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ABHD5Q8WTS1 349 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 SCAMP1O15126 338 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT2B4P06133 528 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 USP17L7P0C7H9 530 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 NDUFA9Q16795 377 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ARHGAP12Q8IWW6 846 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 SCUBE3Q8IX30 993 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 MCOLN2Q8IZK6 566 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ARL14Q8N4G2 192 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 FUZQ9BT04 418 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 GRIA1P42261 906 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ALDH3B2P48448 385 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 TNS4Q8IZW8 715 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ESX1Q8N693 406 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 DQX1Q8TE96 717 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 LINGO1Q96FE5 620 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF347Q96SE7 839 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ORAI2Q96SN7 254 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 BICRAQ9NZM4 1560 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 CCNHP51946 323 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 HERVK_113P62684 666 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 SSX2Q16385 188 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 RBFAQ8N0V3 343 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 CPSF7Q8N684 471 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ALG2Q9H553 416 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 FBXO6Q9NRD1 293 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ERVK-18Q9QC07 812 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 AGAP5A6NIR3 686 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF132P52740 706 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 PGM2L1Q6PCE3 622 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 LAS2Q8IYD9 372 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 BEND7Q8N7W2 519 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC43A3Q8NBI5 491 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 TERB2Q8NHR7 220 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ABCG8Q9H221 673 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 KAT8Q9H7Z6 458 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 PNPLA7Q6ZV29 1317 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 H7C417 338 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 ADH6P28332 368 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 FNTBP49356 437 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 LIMK2P53671 638 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 AKR1C8PQ5T2L2 129 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CYP4V2Q6ZWL3 525 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 GALNT12Q8IXK2 581 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 S100A16Q96FQ6 103 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 MFSD14AQ96MC6 490 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 RIPOR3Q96MK2 946 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CDH22Q9UJ99 828 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 ISM1B1AKI9 464 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CACNB4O00305 520 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 OIP5O43482 229 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CPN2P22792 545 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 EIF4BP23588 611 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 RBL1P28749 1068 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 KIR3DL1P43629 444 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 IQCCQ4KMZ1 466 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 C16orf46Q6P387 395 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 DCDC5Q6ZRR9 648 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 PLEKHA3Q9HB20 300 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 SLAIN2Q9P270 581 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 FBXL3Q9UKT7 428 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 TMPRSS11EQ9UL52 423 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF490Q9ULM2 529 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 IFNA5P01569 189 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 GTPBP3Q969Y2 492 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 COLEC10Q9Y6Z7 277 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CAP2P40123 477 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 FGL1Q08830 312 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CPSF6Q16630 551 aaKnown RBP eCLIP13.18□□□□□ -0.31e-7■■■■■ 28.7
CCDC88A-204ENST00000413716 FBXO43Q4G163 708 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC22A15Q8IZD6 547 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 LNX2Q8N448 690 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 DNAJB3Q8WWF6 145 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 POPDC2Q9HBU9 364 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 ATP6AP2A0A1C7CYW4 349 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CCNB1P14635 433 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 MAGEA3P43357 314 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC9B2Q86UD5 537 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms