RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 KCNK6Q9Y257 313 aa6.27□□□□□ -1.41
USP54-202ENST00000413442 R3HDM2Q9Y2K5 976 aaKnown RBP6.27□□□□□ -1.41
USP54-202ENST00000413442 ARL5AQ9Y689 179 aa6.27□□□□□ -1.41
USP54-202ENST00000413442 MN1Q10571 1320 aaPredicted RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 PIKFYVEQ9Y2I7 2098 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 URB1O60287 2271 aaKnown RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 A0A0U1RQS6 177 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 TCRBV7S2A1N4TA0A589 114 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 SDR42E2A6NKP2 422 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 STMND1H3BQB6 276 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 SNX2O60749 519 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 UBXN7O94888 489 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 TTC4O95801 387 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 KRT14P02533 472 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 MPOP05164 745 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 MTHFD1P11586 935 aaKnown RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 MYF5P13349 255 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 MAP4P27816 1152 aaKnown RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 SLC5A2P31639 672 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 COILP38432 576 aaPredicted RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 GDF10P55107 478 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 MAZP56270 477 aaKnown RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 PRKAA1Q13131 559 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 KRT33BQ14525 404 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 GSE1Q14687 1217 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 POU6F1Q14863 301 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 RPE65Q16518 533 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 AMZ1Q400G9 498 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 DNAJC21Q5F1R6 531 aaKnown RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 TMTC4Q5T4D3 741 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 PHF19Q5T6S3 580 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 PAPD7Q5XG87 772 aaKnown RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 KCTD16Q68DU8 428 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 ARMC6Q6NXE6 501 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 TTC23LQ6PF05 361 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 CCDC137Q6PK04 289 aaKnown RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 ZNF574Q6ZN55 896 aaPredicted RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 USP53Q70EK8 1073 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 GPR155Q7Z3F1 870 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 PRSS42Q7Z5A4 293 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 TRIM74Q86UV6 250 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 HOOK3Q86VS8 718 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 SERPINA9Q86WD7 417 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 CFAP206Q8IYR0 622 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 TBC1D21Q8IYX1 336 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 PRELID2Q8N945 189 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 Q8N9G6 341 aaPredicted RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 ACVR1CQ8NER5 493 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 OR52K1Q8NGK4 314 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 OR13C4Q8NGS5 318 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 GPR150Q8NGU9 434 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 DENND1AQ8TEH3 1009 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 KCNE4Q8WWG9 221 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 ATG4AQ8WYN0 398 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 KLHL6Q8WZ60 621 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 NCSTNQ92542 709 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 HDAC10Q969S8 669 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 SLC22A18Q96BI1 424 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 LRRC39Q96DD0 335 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 SGF29Q96ES7 293 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 C9orf72Q96LT7 481 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 OSBPL9Q96SU4 736 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 ZNF768Q9H5H4 540 aaKnown RBP6.26□□□□□ -1.41
USP54-202ENST00000413442 KIR3DX1Q9H7L2 352 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 C10orf88Q9H8K7 445 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 PRDM8Q9NQV8 689 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 C1GALT1Q9NS00 363 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 SAMD15Q9P1V8 674 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 PCYOX1Q9UHG3 505 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 TCAF1Q9Y4C2 921 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 PLEKHM1Q9Y4G2 1056 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 LOXL2Q9Y4K0 774 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 PCDHB1Q9Y5F3 818 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 SAR1BQ9Y6B6 198 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 COMMD10Q9Y6G5 202 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 NCOR2Q9Y618 2525 aa6.26□□□□□ -1.41
USP54-202ENST00000413442 SPTBN2O15020 2390 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 ACACBO00763 2458 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 A0A0U1RQJ8 604 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 FAM237BA0A1B0GVD1 139 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 CTAGE9A4FU28 777 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 OR2AG2A6NM03 316 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 PRMT5O14744 637 aaPredicted RBP6.25□□□□□ -1.41
USP54-202ENST00000413442 CD3EAPO15446 510 aaKnown RBP6.25□□□□□ -1.41
USP54-202ENST00000413442 TLX3O43711 291 aaPredicted RBP6.25□□□□□ -1.41
USP54-202ENST00000413442 PHF2O75151 1096 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 SLC4A1P02730 911 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 ESR1P03372 595 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 APOA4P06727 396 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 POLBP06746 335 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 BRAFP15056 766 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 TPH1P17752 444 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 RPS3P23396 243 aaKnown RBP eCLIP6.25□□□□□ -1.41
USP54-202ENST00000413442 FOXN2P32314 431 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 SKIV2L2P42285 1042 aaKnown RBP6.25□□□□□ -1.41
USP54-202ENST00000413442 ATP1A2P50993 1020 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 PDX1P52945 283 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 BASP1P80723 227 aaKnown RBP6.25□□□□□ -1.41
USP54-202ENST00000413442 MC1RQ01726 317 aa6.25□□□□□ -1.41
USP54-202ENST00000413442 ACY1Q03154 408 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms