RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 KCNJ13O60928 360 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 LIPCP11150 499 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 VCLP18206 1134 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 ACRV1P26436 265 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 CSTF2P33240 577 aaKnown RBP eCLIP18.66■□□□□ 0.58
SF3A1-202ENST00000411423 FDFT1P37268 417 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 PRLHRP49683 370 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 ZRANB3Q5FWF4 1079 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 ANKS6Q68DC2 871 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 VASH2Q86V25 355 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 FAM129CQ86XR2 697 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 AVL9Q8NBF6 648 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 TRIM58Q8NG06 486 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 OR13J1Q8NGT2 312 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 UBE2Q2Q8WVN8 375 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 ULK4Q96C45 1275 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 C9orf72Q96LT7 481 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 RMDN2Q96LZ7 410 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 TGM7Q96PF1 710 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 TAAR9Q96RI9 348 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 COPS8Q99627 209 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 CTRCQ99895 268 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 CASS4Q9NQ75 786 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 ZDHHC3Q9NYG2 299 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 AKAP7Q9P0M2 348 aaPredicted RBP18.66■□□□□ 0.58
SF3A1-202ENST00000411423 PCDHGA3Q9Y5H0 932 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 PRSS21Q9Y6M0 314 aa18.66■□□□□ 0.58
SF3A1-202ENST00000411423 K7ENP7 123 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 CAPN5O15484 640 aaPredicted RBP18.65■□□□□ 0.58
SF3A1-202ENST00000411423 CEP104O60308 925 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 ATP1B2P14415 290 aaPredicted RBP18.65■□□□□ 0.58
SF3A1-202ENST00000411423 FOXN2P32314 431 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 VAC14Q08AM6 782 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 DBN1Q16643 649 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 DRICH1Q6PGQ1 229 aaPredicted RBP18.65■□□□□ 0.58
SF3A1-202ENST00000411423 INO80CQ6PI98 192 aaPredicted RBP18.65■□□□□ 0.58
SF3A1-202ENST00000411423 SNRNP27Q8WVK2 155 aaKnown RBP18.65■□□□□ 0.58
SF3A1-202ENST00000411423 RNF31Q96EP0 1072 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 ZNF514Q96K75 400 aaPredicted RBP18.65■□□□□ 0.58
SF3A1-202ENST00000411423 NRTNQ99748 197 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 KCNF1Q9H3M0 494 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 SIDT1Q9NXL6 827 aaKnown RBP18.65■□□□□ 0.58
SF3A1-202ENST00000411423 SLC39A1Q9NY26 324 aa18.65■□□□□ 0.58
SF3A1-202ENST00000411423 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.65■□□□□ 0.58
SF3A1-202ENST00000411423 CCDC162PA2VCL2 907 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 B4E171 279 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 POLBP06746 335 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 MTHFD1P11586 935 aaKnown RBP18.64■□□□□ 0.57
SF3A1-202ENST00000411423 AMD1P17707 334 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 TSPAN7P41732 249 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 HALP42357 657 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 CAPZBP47756 277 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 UCNP55089 124 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 MC2RQ01718 297 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 CDH17Q12864 832 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 GPR33Q49SQ1 333 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 TAS2R42Q7RTR8 314 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 LINC00523Q86TU6 105 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 REXO1L1PQ8IX06 675 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 CFAP206Q8IYR0 622 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 CLDN19Q8N6F1 224 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 PRELID2Q8N945 189 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 DNAAF3Q8N9W5 541 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 LRRC45Q96CN5 670 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 DCUN1D1Q96GG9 259 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 CCNL2Q96S94 520 aaPredicted RBP18.64■□□□□ 0.57
SF3A1-202ENST00000411423 SPRY4Q9C004 299 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 B3GNT4Q9C0J1 378 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 EPB41L1Q9H4G0 881 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 IMP3Q9NV31 184 aaKnown RBP18.64■□□□□ 0.57
SF3A1-202ENST00000411423 WDR70Q9NW82 654 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 PAK5Q9P286 719 aa18.64■□□□□ 0.57
SF3A1-202ENST00000411423 DRG1Q9Y295 367 aaKnown RBP18.64■□□□□ 0.57
SF3A1-202ENST00000411423 ERI2A8K979 691 aaKnown RBP18.63■□□□□ 0.57
SF3A1-202ENST00000411423 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.63■□□□□ 0.57
SF3A1-202ENST00000411423 PRB1P04280 392 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 MSNP26038 577 aaKnown RBP18.63■□□□□ 0.57
SF3A1-202ENST00000411423 CACNG1Q06432 222 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 TSTD2Q5T7W7 516 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 KIAA1614Q5VZ46 1190 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 CAPRIN2Q6IMN6 1127 aaKnown RBP18.63■□□□□ 0.57
SF3A1-202ENST00000411423 PPP1R21Q6ZMI0 780 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 PLXDC1Q8IUK5 500 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 RBM12BQ8IXT5 1001 aaKnown RBP18.63■□□□□ 0.57
SF3A1-202ENST00000411423 MS4A14Q96JA4 679 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 C12orf66Q96MD2 445 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 UBL7Q96S82 380 aaPredicted RBP18.63■□□□□ 0.57
SF3A1-202ENST00000411423 DDA1Q9BW61 102 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 SMARCAL1Q9NZC9 954 aa18.63■□□□□ 0.57
SF3A1-202ENST00000411423 AHCTF1Q8WYP5 2266 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 TEX51A0A1B0GUA7 166 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 TCRBV7S3A2A0A539 114 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 APRTP07741 180 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 ANKRD34CP0C6C1 535 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 PDHA2P29803 388 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 SEPHS1P49903 392 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 SH3BP2P78314 561 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 SEMA3AQ14563 771 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 TTC27Q6P3X3 843 aa18.62■□□□□ 0.57
SF3A1-202ENST00000411423 CCDC81Q6ZN84 652 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms