RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 SEZ6Q53EL9 994 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SPIN4Q56A73 249 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 DACT2Q5SW24 774 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RAP1GAP2Q684P5 730 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MBOAT1Q6ZNC8 495 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RNF148Q8N7C7 305 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 OR4C6Q8NH72 309 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 KAT2AQ92830 837 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 KCTD7Q96MP8 289 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 HAPLN3Q96S86 360 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ACTR6Q9GZN1 396 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MYNNQ9NPC7 610 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF639Q9UID6 485 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 CDC14AQ9UNH5 594 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 COQ4Q9Y3A0 265 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 KANTRA0A1W2PQU2 76 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 DDTLA6NHG4 134 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 EML1O00423 815 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 PPEF2O14830 753 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 TBL1XO60907 577 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RCBTB2O95199 551 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MT-CO1P00395 513 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 C9P02748 559 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 DDX6P26196 483 aaKnown RBP eCLIP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 UGT2B10P36537 528 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 GRK6P43250 576 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 CCR10P46092 362 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ADAM8P78325 824 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF45Q02386 682 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 UBAP2LQ14157 1087 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 C9orf64Q5T6V5 341 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RPL13AP3Q6NVV1 102 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 XYLT1Q86Y38 959 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ECHDC2Q86YB7 292 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 BANPQ8N9N5 519 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 LRRC57Q8N9N7 239 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SLC13A3Q8WWT9 602 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MARK4Q96L34 752 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 FCRL5Q96RD9 977 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ADAM2Q99965 735 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 BCL2L14Q9BZR8 327 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ZFP57Q9NU63 452 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SPATA7Q9P0W8 599 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 NR2E3Q9Y5X4 410 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 HSPE1-MOB4S4R3N1 261 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SLC19A2O60779 497 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 HLA-DPB1P04440 258 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RLN1P04808 185 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 VEGFAP15692 232 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 F8A1P23610 371 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MTM1Q13496 603 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 CNPY1Q3B7I2 92 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ZIK1Q3SY52 487 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 XKR4Q5GH76 650 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 C9orf57Q5W0N0 161 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MSANTD1Q6ZTZ1 278 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RASGEF1AQ8N9B8 481 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 TRPM4Q8TD43 1214 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 GEMIN6Q8WXD5 167 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 FCRL2Q96LA5 508 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 HERC2P3Q9BVR0 1158 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MKKSQ9NPJ1 570 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 IFT46Q9NQC8 304 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SOHLH2Q9NX45 425 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 CNTN3Q9P232 1028 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 NUFIP1Q9UHK0 495 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ASF1AQ9Y294 204 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SPIN1Q9Y657 262 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 PIK3C2BO00750 1634 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 H0YAE9 185 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CXCR6O00574 342 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 MEIS2O14770 477 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 RAB36O95755 333 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ATXN8OSP0DMR3 200 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SNHG28P0DPA3 235 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CBX3Q13185 183 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 ORC1Q13415 861 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 FNBP1LQ5T0N5 605 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SHQ1Q6PI26 577 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 NUP54Q7Z3B4 507 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 AMIGO2Q86SJ2 522 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 HID1Q8IV36 788 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 TIGD4Q8IY51 512 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SDR16C5Q8N3Y7 309 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PNLDC1Q8NA58 520 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SMG8Q8ND04 991 aaKnown RBP6.02□□□□□ -1.45
SCN1A-203ENST00000409050 GSTCDQ8NEC7 633 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 CPT1BQ92523 772 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 NMUR2Q9GZQ4 415 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 IL25Q9H293 177 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 DPAGT1Q9H3H5 408 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 OGDHLQ9ULD0 1010 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PLEKHA6Q9Y2H5 1048 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 SH3PXD2BA1X283 911 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 TBC1D3BA6NDS4 549 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 FABP12A6NFH5 140 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 VSTM5A8MXK1 200 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 COQ9O75208 318 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 MAP3K6O95382 1288 aa6.02□□□□□ -1.45
SCN1A-203ENST00000409050 PRAMEF1O95521 474 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms