RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 OCMP0CE72 109 aaPredicted RBP6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 CETPP11597 493 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 RPA3P35244 121 aaPredicted RBP6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 GAD2Q05329 585 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 MGAT5Q09328 741 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 MAMLD1Q13495 774 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 PCGF3Q3KNV8 242 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 TAF1BQ53T94 588 aaPredicted RBP6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 GNASQ5JWF2 1037 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 C1orf53Q5VUE5 145 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 CGB2Q6NT52 195 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 DENND5BQ6ZUT9 1274 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 PDIK1LQ8N165 341 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 LNX2Q8N448 690 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 SIMC1Q8NDZ2 872 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 RP9Q8TA86 221 aaKnown RBP6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 TCP10LQ8TDR4 215 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 DNAJA4Q8WW22 397 aaPredicted RBP6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 PROX1Q92786 737 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 C7orf26Q96N11 449 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 SH2D3AQ9BRG2 576 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 DEFB129Q9H1M3 183 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 CAB39LQ9H9S4 337 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 CERS4Q9HA82 394 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 NPHS2Q9NP85 383 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 SLCO1B3Q9NPD5 702 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 DNPEPQ9ULA0 475 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 PCDHAC2Q9Y5I4 1007 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 TRANK1O15050 2925 aa6.52□□□□□ -1.37
TM9SF4-202ENST00000398022 hCG_1809904A0A1W2PP81 198 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 A0A1W2PPE2 198 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 A0A1W2PR64 198 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TXNDC9O14530 226 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TRAFD1O14545 582 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 MATN3O15232 486 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 GYG2O15488 501 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 OPHN1O60890 802 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 EIF2AK2P19525 551 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 EPHB2P29323 1055 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 THPOP40225 353 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 VHLP40337 213 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 MECP2P51608 486 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 IL24Q13007 206 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PDK1Q15118 436 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TMEM44Q2T9K0 475 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 LIPNQ5VXI9 398 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 KCNT2Q6UVM3 1135 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 HTR3DQ70Z44 454 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 OR13C2Q8NGS9 318 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 C10orf82Q8WW14 230 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PPP1R2P1Q96PQ5 205 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TMEM79Q9BSE2 394 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 THUMPD3Q9BV44 507 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SLC4A5Q9BY07 1137 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 OPN3Q9H1Y3 402 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ZDHHC4Q9NPG8 344 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TMEM39AQ9NV64 488 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 MTO1Q9Y2Z2 717 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 MRPS2Q9Y399 296 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PCDHA10Q9Y5I2 948 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CHD7Q9P2D1 2997 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 A0A0G2JND7 137 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 I3L4J1 428 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 DHX15O43143 795 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 RSL1D1O76021 490 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CLPXO76031 633 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 BEST1O76090 585 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 HTR3BO95264 441 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CKMP06732 381 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 GJB1P08034 283 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 INHBAP08476 426 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PFKLP17858 780 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 F8A1P23610 371 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 EIF2S3P41091 472 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PRIM2P49643 509 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CAPZA1P52907 286 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SUCLG1P53597 346 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ACTR3P61158 418 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 NOMO3P69849 1222 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 DSC1Q08554 894 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PIGHQ14442 188 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 XKR4Q5GH76 650 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 GALNT18Q6P9A2 607 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 METAP1DQ6UB28 335 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 SZRD1Q7Z422 152 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PPIL6Q8IXY8 311 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ENDOVQ8N8Q3 282 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TMEM35BQ8NCS4 154 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 BBS10Q8TAM1 723 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 ZSCAN18Q8TBC5 510 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 FAM174AQ8TBP5 190 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 FAM151AQ8WW52 585 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PHF21BQ96EK2 531 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 OLFM1Q99784 485 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 KCNS3Q9BQ31 491 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 PAPOLGQ9BWT3 736 aaKnown RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 COG4Q9H9E3 785 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 MCCC2Q9HCC0 563 aa6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 CHMP1AQ9HD42 196 aaPredicted RBP6.51□□□□□ -1.37
TM9SF4-202ENST00000398022 TRNAU1APQ9NX07 287 aaKnown RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms