RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PRPS2P11908 318 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 AMD1P17707 334 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 HOXC8P31273 242 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 MYBPC1Q00872 1141 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 MBTD1Q05BQ5 628 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 CACNG1Q06432 222 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 SNAPC1Q16533 368 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 ACSBG2Q5FVE4 666 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 SDHAF4Q5VUM1 108 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 BEND5Q7L4P6 421 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 FAM98AQ8NCA5 519 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 PHC3Q8NDX5 983 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 PIK3R3Q92569 461 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 DNAJC1Q96KC8 554 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 TTLL2Q9BWV7 592 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 KIAA1522Q9P206 1035 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 SLC27A5Q9Y2P5 690 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 NR2E1Q9Y466 385 aa10.15□□□□□ -0.78
LIMCH1-203ENST00000396595 PPP1R11O60927 126 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 AP2A2O94973 939 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 METTL18O95568 372 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 NCK1P16333 377 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 ITPKAP23677 461 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 SULT2A1Q06520 285 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 RHEBQ15382 184 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 AADACL4Q5VUY2 407 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 FAM46CQ5VWP2 391 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 FAM171BQ6P995 826 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 HAGHLQ6PII5 290 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 RAVER1Q8IY67 606 aaKnown RBP10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 GPR65Q8IYL9 337 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 GJD3Q8N144 294 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 FCGR1BQ92637 280 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 PHF12Q96QT6 1004 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 HMX1Q9NP08 348 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 MED11Q9P086 117 aa10.15□□□□□ -0.79
LIMCH1-203ENST00000396595 GTPBP1O00178 669 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 SCAMP3O14828 347 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 FOXN2P32314 431 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 HSD17B12Q53GQ0 312 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 ZDHHC24Q6UX98 284 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 SATL1Q86VE3 508 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 MAFIPQ8WZ33 124 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 RAD51AP1Q96B01 352 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 AP2M1Q96CW1 435 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CD320Q9NPF0 282 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 DMAC2Q9NW81 257 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 HMGXB4Q9UGU5 601 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 OAS3Q9Y6K5 1087 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 KIDINS220Q9ULH0 1771 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 SMIM28A0A1B0GU29 152 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 SMIM35A0A1B0GVV1 85 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 A0A1W2PQ67 120 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 SULT1B1O43704 296 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 ELFN1P0C7U0 828 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CHRNB2P17787 502 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 AP1S1P61966 158 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 TSTD2Q5T7W7 516 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF730Q6ZMV8 503 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 KCTD8Q6ZWB6 473 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CHST15Q7LFX5 561 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CIR1Q86X95 450 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CYP4X1Q8N118 509 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 VANGL1Q8TAA9 524 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 ADAMTS15Q8TE58 950 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 FAXDC2Q96IV6 333 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 EIF3KQ9UBQ5 218 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 MRPS33Q9Y291 106 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 MAN2B2Q9Y2E5 1009 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 PCDHGB3Q9Y5G1 929 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 RAI2Q9Y5P3 530 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 C2CD4BA6NLJ0 364 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 H3BNH8 94 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 NDUFS2O75306 463 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 ERN1O75460 977 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CCNDBP1O95273 360 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 MT-ND1P03886 318 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CD48P09326 243 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CREB1P16220 341 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 BRCC3P46736 316 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 HERC3Q15034 1050 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 TCEAL5Q5H9L2 206 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 C9orf64Q5T6V5 341 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 PYHIN1Q6K0P9 492 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 RFWD3Q6PCD5 774 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 FSTL5Q8N475 847 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 C1orf127Q8N9H9 656 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 GLB1L3Q8NCI6 653 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 OR5J2Q8NH18 312 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 SLC9A6Q92581 669 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 MCMBPQ9BTE3 642 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 COQ10BQ9H8M1 238 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 CLEC4AQ9UMR7 237 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 PRAMEF33A0A0G2JMD5 474 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 A0A1W2PQH9 124 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 MATN3O15232 486 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 MSI1O43347 362 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 MSCO60682 206 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 PRAMEF10O60809 474 aa10.14□□□□□ -0.79
LIMCH1-203ENST00000396595 KERAO60938 352 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms