RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GFAPP14136 432 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 HOXB2P14652 356 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 IMPDH1P20839 514 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 ARRB2P32121 409 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 VHLP40337 213 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 SLC34A1Q06495 639 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 UBAP2LQ14157 1087 aaKnown RBP17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 KPNB1Q14974 876 aaKnown RBP17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 SMAD2Q15796 467 aaKnown RBP17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 CCDC85BQ15834 202 aaPredicted RBP17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 KHDC1Q4VXA5 237 aaKnown RBP17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 C2orf27AQ580R0 203 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 EOGTQ5NDL2 527 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 GPR153Q6NV75 609 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 TRIM67Q6ZTA4 783 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 RFLNAQ6ZTI6 216 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 FRA10AC1Q70Z53 315 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 CLDN19Q8N6F1 224 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 TXNDC5Q8NBS9 432 aaKnown RBP17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 PTERQ96BW5 349 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 L3HYPDHQ96EM0 354 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 COG4Q9H9E3 785 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 ANGPTL2Q9UKU9 493 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 SUPT3HB4E1H0 165 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 MAN2B1O00754 1011 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 MID1O15344 667 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 SUPT3HO75486 399 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 RECQL5O94762 991 aaPredicted RBP17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 EGFP01133 1207 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 FOSL2P15408 326 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 CPOXP36551 454 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 RPS14P62263 151 aaKnown RBP17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 GALNT1Q10472 559 aaPredicted RBP17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 ACSBG2Q5FVE4 666 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 PIP5KL1Q5T9C9 394 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 SEL1L3Q68CR1 1132 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 NAPRTQ6XQN6 538 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 GPSM1Q86YR5 675 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 ULK2Q8IYT8 1036 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 FBXO39Q8N4B4 442 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 HDDC3Q8N4P3 179 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 ZNF781Q8N8C0 355 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 EEF1AKMT1Q8WVE0 214 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 FAR2Q96K12 515 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 ATOH8Q96SQ7 321 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 FAM126AQ9BYI3 521 aaPredicted RBP17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 ZDHHC4Q9NPG8 344 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 SLC2A4RGQ9NR83 387 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 NUDT4Q9NZJ9 180 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 PRSS21Q9Y6M0 314 aa17.92■□□□□ 0.46
CCDC88C-203ENST00000389856 TRIOBPQ9H2D6 2365 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 PABPN1LA6NDY0 278 aaKnown RBP17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 LIN7AO14910 233 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 SPINT1O43278 529 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 MMP20O60882 483 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 FKBP6O75344 327 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 KLF8O95600 359 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 TSPAN12O95859 305 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 GSTM1P09488 218 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 SRFP11831 508 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 GPR1P46091 355 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 PTDSS1P48651 473 aaKnown RBP17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 ACTR3P61158 418 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 HERVK_113P63132 956 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 GSTM4Q03013 218 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 GTF2H3Q13889 308 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 TAF11Q15544 211 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 TSNQ15631 228 aaKnown RBP17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 LEXMQ3ZCV2 418 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 SH2D4BQ5SQS7 431 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 PLEKHS1Q5SXH7 462 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 AAGABQ6PD74 315 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 ACAD11Q709F0 780 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 GANCQ8TET4 914 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 ZNF514Q96K75 400 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 C1QTNF7Q9BXJ2 289 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 ERVK-6Q9BXR3 956 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 EPHX3Q9H6B9 360 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 TCF7L2Q9NQB0 619 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 LAMA3Q16787 3333 aa17.91■□□□□ 0.46
CCDC88C-203ENST00000389856 NPEPPSL1A6NEC2 478 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 IQCF5A8MTL0 148 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 STX16-NPEPL1H3BU86 382 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 SOX1O00570 391 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 STX16O14662 325 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 RAD51BO15315 384 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 CCNT2O60583 730 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 RNASEH2AO75792 299 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 MAPK9P45984 424 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 CPA2P48052 419 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 METAP1P53582 386 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 TDGQ13569 410 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 NAA25Q14CX7 972 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 RCN1Q15293 331 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 OR4D1Q15615 310 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 RAET1GQ6H3X3 334 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 KBTBD6Q86V97 674 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 CPSF7Q8N684 471 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 IL17RCQ8NAC3 791 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms