RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ELOVL2Q9NXB9 296 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 SUN2Q9UH99 717 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 RNF11Q9Y3C5 154 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 OBSL1O75147 1896 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 SOCS5O75159 536 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 TRIM16O95361 564 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 GLUD1P00367 558 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 MAPK8P45983 427 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 RPL5P46777 297 aaKnown RBP20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 RGS4P49798 205 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 TXNL4AP83876 142 aaKnown RBP20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 TIGD2Q4W5G0 525 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 DGKKQ5KSL6 1271 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 PPP4R4Q6NUP7 873 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 ZSWIM9Q86XI8 627 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 MYO1HQ8N1T3 1032 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 PAF1Q8N7H5 531 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 NCSTNQ92542 709 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 EPB41L1Q9H4G0 881 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 IPPKQ9H8X2 491 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 HEBP1Q9NRV9 189 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 CFAP97Q9P2B7 532 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 OARD1Q9Y530 152 aa20.52■□□□□ 0.87
CCDC88B-203ENST00000359902 SMIM31A0A1B0GVY4 71 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 A8MX80 341 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 KATNA1O75449 491 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 GUCA1CO95843 209 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 CNPP09543 421 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 CD70P32970 193 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 EMX2Q04743 252 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 LIPEQ05469 1076 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 CHRNA6Q15825 494 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 FUT11Q495W5 492 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 TPGS1Q6ZTW0 290 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 ZFAND4Q86XD8 727 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 PTRH1Q86Y79 214 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 ADGRG5Q8IZF4 528 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 HBEGFQ99075 208 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 PRPF18Q99633 342 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 RC3H2Q9HBD1 1191 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 ABCB8Q9NUT2 735 aa20.51■□□□□ 0.87
CCDC88B-203ENST00000359902 GLYATL1P3A0A0U1RQE8 302 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 MYOCOSA0A1B0GUC4 107 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 OTCP00480 354 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 CKMP06732 381 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 IL10P22301 178 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 DGKAP23743 735 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 CASP2P42575 452 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 HSPA7P48741 367 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 TRAF3Q13114 568 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 PRKG2Q13237 762 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 GPRC6AQ5T6X5 926 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 NANOGP8Q6NSW7 305 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 IFNEQ86WN2 208 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 CPXM2Q8N436 756 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 FAM126AQ9BYI3 521 aaPredicted RBP20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 MRPS26Q9BYN8 205 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 ATP13A3Q9H7F0 1226 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 NANOGQ9H9S0 305 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 NDUFA13Q9P0J0 144 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 KIAA1522Q9P206 1035 aaPredicted RBP20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 INTS6Q9UL03 887 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 SOCS2O14508 198 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 LSM1O15116 133 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 OR6B1O95007 311 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 PSMA4P25789 261 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 OXTRP30559 389 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 DEFB103AP81534 67 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 ABRAXAS2Q15018 415 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 MPPE1Q53F39 396 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 MPP7Q5T2T1 576 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 LYPLAL1Q5VWZ2 237 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 CARM1Q86X55 608 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 HS6ST3Q8IZP7 471 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 FIBINQ8TAL6 211 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 VOPP1Q96AW1 172 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 TMEM74Q96NL1 305 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 TOX2Q96NM4 488 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 KCTD14Q9BQ13 255 aaPredicted RBP20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 MUC13Q9H3R2 512 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 ACTL8Q9H568 366 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 AGPAT4Q9NRZ5 378 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 INTS7Q9NVH2 962 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 MAFFQ9ULX9 164 aa20.5■□□□□ 0.87
CCDC88B-203ENST00000359902 NPPAP01160 153 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 MTHFD1P11586 935 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 LAG3P18627 525 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 EEFSECP57772 596 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 PHKG1Q16816 387 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 PLEKHG6Q3KR16 790 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 MACC1Q6ZN28 852 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 MILR1Q7Z6M3 343 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 TSPAN33Q86UF1 283 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 ZBTB2Q8N680 514 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 ZFAND2BQ8WV99 257 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 MRPS31Q92665 395 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 DUS2Q9NX74 493 aaKnown RBP20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 ZMYM5Q9UJ78 669 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 CRLS1Q9UJA2 301 aa20.49■□□□□ 0.87
CCDC88B-203ENST00000359902 SH3BP1Q9Y3L3 701 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms