RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SEMA3GQ9NS98 782 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 ZDHHC2Q9UIJ5 367 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 MYOCOSA0A1B0GUC4 107 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 OR6C70A6NIJ9 312 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 CDH1P12830 882 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 SLC15A1P46059 708 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 FBXL19Q6PCT2 694 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 CFAP52Q8N1V2 620 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 SLC7A6OSQ96CW6 309 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 FCRL4Q96PJ5 515 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 NUSAP1Q9BXS6 441 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 RACGAP1Q9H0H5 632 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 SGK2Q9HBY8 427 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 PCDHB1Q9Y5F3 818 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 CYP11A1P05108 521 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 DCST1Q5T197 706 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 ERMP1Q7Z2K6 904 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 OR6K2Q8NGY2 324 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 IPCEF1Q8WWN9 437 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 DNAJC11Q9NVH1 559 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 TMLHEQ9NVH6 421 aa19.3■□□□□ 0.68
CCDC88B-202ENST00000356786 IQCF5A8MTL0 148 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 CELF2O95319 508 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 IKBKEQ14164 716 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 PABPC1LQ4VXU2 614 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 PCSK9Q8NBP7 692 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 LPPQ93052 612 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 RAD51AP1Q96B01 352 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 PIWIL1Q96J94 861 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 POLR2J2Q9GZM3 115 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 RNF38Q9H0F5 515 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 NUDT4Q9NZJ9 180 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 MAP4K5Q9Y4K4 846 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 FAM234BA2RU67 622 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 TLR5O60602 858 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 POLR2EP19388 210 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 ACADVLP49748 655 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 TPRG1LQ5T0D9 272 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 GCNT6Q5T4J0 391 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 ZNF613Q6PF04 617 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 POF1BQ8WVV4 589 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 FBXL20Q96IG2 436 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 BOLA2-SMG1P6H3BVE0 249 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 STX16O14662 325 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 PMM2O15305 246 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 YES1P07947 543 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 CES1P23141 567 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 L1CAMP32004 1257 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 ASMTP46597 345 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 GSK3BP49841 420 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 PPP2R2BQ00005 443 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 GTF2H2Q13888 395 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 HSDL1Q3SXM5 330 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 GTF2H2CQ6P1K8 395 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 EPGNQ6UW88 154 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 HID1Q8IV36 788 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 OR9I1Q8NGQ6 314 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 TNFAIP8L1Q8WVP5 186 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 SLC22A4Q9H015 551 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 UCKL1Q9NWZ5 548 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 GULP1Q9UBP9 304 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 TOP3BO95985 862 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 F7P08709 466 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 TLX1P31314 330 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 EPHX2P34913 555 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 SPRED3Q2MJR0 410 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 ZNF697Q5TEC3 545 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 DAW1Q8N136 415 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 CSGALNACT1Q8TDX6 532 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 AKTIPQ9H8T0 292 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 TBC1D17Q9HA65 648 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 TMED5Q9Y3A6 229 aa19.29■□□□□ 0.68
CCDC88B-202ENST00000356786 ENO2P09104 434 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 MNDAP41218 407 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 BEX3Q00994 111 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 DGKZQ13574 1117 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 SYCE2Q6PIF2 218 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 RNASE11Q8TAA1 199 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ISOC1Q96CN7 298 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ST14Q9Y5Y6 855 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 COL14A1Q05707 1796 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 A0A088AWK7 358 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 CHURC1-FNTBB4DL54 471 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ZNF879B4DU55 563 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 GPR25O00155 361 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 QSOX1O00391 747 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 MATN3O15232 486 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ACOX3O15254 700 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 SLC7A4O43246 635 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 HTRA2O43464 458 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 DLX3O60479 287 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 CFHP08603 1231 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ANXA4P09525 319 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ZNF10P21506 573 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 PLEKHG4Q58EX7 1191 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 KIAA0930Q6ICG6 404 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 CPNE9Q8IYJ1 553 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 MCMBPQ9BTE3 642 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ATG10Q9H0Y0 220 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 C12orf4Q9NQ89 552 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms