RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SLC35G5Q96KT7 338 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 CAMK1GQ96NX5 476 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 TSSK3Q96PN8 268 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 GPR88Q9GZN0 384 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 MED28Q9H204 178 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 B3GAT2Q9NPZ5 323 aa6.4□□□□□ -1.39
UPF2-201ENST00000356352 TUBA8Q9NY65 449 aaPredicted RBP6.4□□□□□ -1.39
UPF2-201ENST00000356352 PDPK1O15530 556 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PRAMEF1O95521 474 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PRAMEF12O95522 483 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 S100A1P23297 94 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PTGER3P43115 390 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SLC5A3P53794 718 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 TAS2R40P59535 323 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ROR2Q01974 943 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 PRAMEF19Q5SWL8 479 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SDHAF4Q5VUM1 108 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 GK5Q6ZS86 529 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 MSANTD1Q6ZTZ1 278 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ANKS1BQ7Z6G8 1248 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SLITRK4Q8IW52 837 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZNF433Q8N7K0 673 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 SUN3Q8TAQ9 357 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 UFD1Q92890 307 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 EXOSC8Q96B26 276 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 KLHL32Q96NJ5 620 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 KLHL5Q96PQ7 755 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 AGAP2Q99490 1192 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 EGFL7Q9UHF1 273 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 CDC14AQ9UNH5 594 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 MAGEB17A8MXT2 336 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 KLRC4O43908 158 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 BANF1O75531 89 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 RLN2P04090 185 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PIM1P11309 404 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 ARF4P18085 180 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 L1CAMP32004 1257 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 BRCC3P46736 316 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 CLCN7P51798 805 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 LIMK2P53671 638 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 CASP7P55210 303 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 GNA12Q03113 381 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 NAE1Q13564 534 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 IFI44LQ53G44 452 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ABHD13Q7L211 337 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 CPNE9Q8IYJ1 553 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SPATA6LQ8N4H0 392 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZNF527Q8NB42 609 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SNIP1Q8TAD8 396 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 DENND1AQ8TEH3 1009 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 HERVK_113Q902F9 699 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 DIRAS2Q96HU8 199 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PHF12Q96QT6 1004 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SLC38A3Q99624 504 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 MYOCQ99972 504 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ACAT2Q9BWD1 397 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 RC3H2Q9HBD1 1191 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 MCCC2Q9HCC0 563 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SERINC1Q9NRX5 453 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 EVLQ9UI08 416 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 RUVBL1Q9Y265 456 aaKnown RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 MAP4K5Q9Y4K4 846 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PCDHA2Q9Y5H9 948 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 DEPDC5O75140 1603 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ERCC6L2Q5T890 1561 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SALL3Q9BXA9 1300 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 DUXAA6NLW8 204 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 OR1F1O43749 312 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZFP69Q49AA0 526 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 MFSD5Q6N075 450 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ALKBH2Q6NS38 261 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZNF554Q86TJ5 538 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SYVN1Q86TM6 617 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 FAM47BQ8NA70 645 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 IPCEF1Q8WWN9 437 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 SGCDQ92629 289 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PIGKQ92643 395 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZBED6CLQ96FA7 236 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 GPR20Q99678 358 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 GPR21Q99679 349 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 HSD17B14Q9BPX1 270 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 UNC93B1Q9H1C4 597 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 SRMSQ9H3Y6 488 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 MKKSQ9NPJ1 570 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 RGS17Q9UGC6 210 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 FBXO9Q9UK97 447 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 MED31Q9Y3C7 131 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PCDHGA11Q9Y5H2 935 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 PLSCR1O15162 318 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ZBTB22O15209 634 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 NME6O75414 186 aaPredicted RBP6.39□□□□□ -1.39
UPF2-201ENST00000356352 NOL4O94818 638 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ALPPP05187 535 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 C2P06681 752 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 TACSTD2P09758 323 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 MPSTP25325 297 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 ECHS1P30084 290 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 PIK3CBP42338 1070 aa6.39□□□□□ -1.39
UPF2-201ENST00000356352 RPS9P46781 194 aaKnown RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms