RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ACTR10Q9NZ32 417 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 FGF1P05230 155 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 UCHL1P09936 223 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 ACOT2P49753 483 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 GCNT6Q5T4J0 391 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 RANBP3LQ86VV4 465 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SPOCK2Q92563 424 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 OR5B12Q96R08 314 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 APBA2Q99767 749 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 FAM83DQ9H4H8 585 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 MRTO4Q9UKD2 239 aaKnown RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 A0A087WZ62 844 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 H3BSA7 217 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 HSPA12AO43301 675 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 FGFR1P11362 822 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 IL4RP24394 825 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 GRB10Q13322 594 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 KCNN1Q92952 543 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 TWNKQ96RR1 684 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SECISBP2Q96T21 854 aaKnown RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 ALG9Q9H6U8 611 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 NT5DC2Q9H857 520 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 ARL15Q9NXU5 204 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 TULP4Q9NRJ4 1543 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SCN9AQ15858 1988 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 NAP1L6A6NFF2 107 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 GH1P01241 217 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 FMO4P31512 558 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 GNPDA1P46926 289 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 MRPS10P82664 201 aaKnown RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 AMIGO1Q86WK6 493 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 TMEM161BQ8NDZ6 487 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 PNO1Q9NRX1 252 aaKnown RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 BMP6P22004 513 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 RHDQ02161 417 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 GRK1Q15835 563 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SMIM15Q7Z3B0 74 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 FXYD6-FXYD2A0A087WZ82 144 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 M6PRP20645 277 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 GALEQ14376 348 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 SH3PXD2AQ5TCZ1 1133 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 FXYD6Q9H0Q3 95 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 NYAP2Q9P242 653 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 PCDHGB5Q9Y5G0 923 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 H7C1Q1 480 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 SHOXO15266 292 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 HOXD8P13378 290 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 ENTPD1P49961 510 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 ANKRD22Q5VYY1 191 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 LINGO2Q7L985 606 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 OR52K1Q8NGK4 314 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 FAM234BA2RU67 622 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 CATP04040 527 aaKnown RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 MFSD10Q14728 455 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 TIGD2Q4W5G0 525 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 ILDR2Q71H61 639 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 NOXA1Q86UR1 476 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 SMAD5Q99717 465 aaKnown RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 SPOCK3Q9BQ16 436 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 BHLHE41Q9C0J9 482 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 MITFO75030 526 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 CYP2A6P11509 494 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 DGKQP52824 942 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 C10orf62Q5T681 223 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 RTL4Q6ZR62 310 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 ARMC10Q8N2F6 343 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 SGCDQ92629 289 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 MYO19Q96H55 970 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 DHRS1Q96LJ7 313 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 GAD1Q99259 594 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 LRRTM2O43300 516 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 PON2Q15165 354 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 ABCA11PQ4W5N1 156 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 MEDAGQ5VYS4 303 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 HEBP1Q9NRV9 189 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 A6NHS1 94 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 DNASE1P24855 282 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 RBBP4Q09028 425 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 GRAPQ13588 217 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 GXYLT1Q4G148 440 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 CBWD6Q4V339 395 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 PIGGQ5H8A4 983 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 USP45Q70EL2 814 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 SULF1Q8IWU6 871 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 OR2L5Q8NG80 312 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 GRAPLQ8TC17 118 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 FCRL4Q96PJ5 515 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 FANCFQ9NPI8 374 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 ABCD2Q9UBJ2 740 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 CNOT6Q9ULM6 557 aaKnown RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 HLA-EP13747 358 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 PBX1P40424 430 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF227Q86WZ6 799 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 RXFP2Q8WXD0 754 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 CDC6Q99741 560 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 SEC14L3Q9UDX4 400 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 INMT-MINDY4F8WBC2 141 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF182P17025 639 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-203ENST00000353578 RAB4AP20338 218 aa12.47□□□□□ -0.41
COL6A3-203ENST00000353578 PTAR1Q7Z6K3 402 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms