RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ARHGAP10A1A4S6 786 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 SOCS2O14508 198 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 ARPC2O15144 300 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 LRG1P02750 347 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 UGT2B4P06133 528 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 CHRM1P11229 460 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 SLC7A1P30825 629 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 ATP4BP51164 291 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 RPL38P63173 70 aaKnown RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 LIPEQ05469 1076 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 AP5B1Q2VPB7 878 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 CNPY1Q3B7I2 92 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 RFTN2Q52LD8 501 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 TXNDC11Q6PKC3 985 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 TICAM1Q8IUC6 712 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 GPR26Q8NDV2 337 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 ROPN1LQ96C74 230 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 TRMT2BQ96GJ1 504 aaKnown RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 TMEM79Q9BSE2 394 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 MAGEE1Q9HCI5 957 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 MBD1Q9UIS9 605 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 TCRBV3S1A0A5B6 114 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 DHRS12A0PJE2 317 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 OR7A17O14581 309 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 RSL1D1O76021 490 aaKnown RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 CLIC3O95833 236 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 GSTT1P30711 240 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 GSK3BP49841 420 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 HSPA14Q0VDF9 509 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 PTGR1Q14914 329 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 PLEKHG6Q3KR16 790 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 LRRC66Q68CR7 880 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 KIAA2013Q8IYS2 634 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 NAT16Q8N8M0 369 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 CATSPER1Q8NEC5 780 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 KCTD14Q9BQ13 255 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 GPATCH1Q9BRR8 931 aaKnown RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 EFHD1Q9BUP0 239 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 ALG2Q9H553 416 aa10.19□□□□□ -0.78
LIMA1-201ENST00000341247 SPATS2LQ9NUQ6 558 aaKnown RBP10.19□□□□□ -0.78
LIMA1-201ENST00000341247 A0A1W2PP18 115 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 CLCN4P51793 760 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 AP1S1P61966 158 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 C8orf82Q6P1X6 216 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-201ENST00000341247 CNKSR3Q6P9H4 555 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 STK40Q8N2I9 435 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 MARVELD2Q8N4S9 558 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 CBR4Q8N4T8 237 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 PROKR1Q8TCW9 393 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 VOPP1Q96AW1 172 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 PYCR2Q96C36 320 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 MTG2Q9H4K7 406 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 CAAP1Q9H8G2 361 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 RIC8BQ9NVN3 520 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 RNF103-CHMP3A0A140T963 221 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 BBIP1A8MTZ0 92 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 RAD51BO15315 384 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 CLPTM1O96005 669 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 ERVK-8P63133 956 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 PRKCQQ04759 706 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 TRAP1Q12931 704 aaKnown RBP10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SELPLGQ14242 412 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SLC30A9Q6PML9 568 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 Q6ZNB5 142 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SNX20Q7Z614 316 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SPRED2Q7Z698 418 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 TCEAL8Q8IYN2 117 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 RBFAQ8N0V3 343 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SORCS1Q8WY21 1168 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 HOPXQ9BPY8 73 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-201ENST00000341247 BEGAINQ9BUH8 593 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 TRIM4Q9C037 500 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SOX17Q9H6I2 414 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-201ENST00000341247 ATP13A3Q9H7F0 1226 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 MRGBPQ9NV56 204 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 GNPTGQ9UJJ9 305 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 RAB26Q9ULW5 256 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 RNF11Q9Y3C5 154 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 NEDD8-MDP1E9PL57 170 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 TAPBPO15533 448 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 DENRO43583 198 aaKnown RBP10.18□□□□□ -0.78
LIMA1-201ENST00000341247 KLK8O60259 260 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 ZNF821O75541 412 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-201ENST00000341247 IGSF6O95976 241 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 C8AP07357 584 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 FAM58BPP0C7Q3 252 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SMIM18P0DKX4 95 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 PCNAP12004 261 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 HLA-FP30511 346 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 PSMD8P48556 350 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 RGS4P49798 205 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 CPSF6Q16630 551 aaKnown RBP eCLIP10.18□□□□□ -0.78
LIMA1-201ENST00000341247 KRT80Q6KB66 452 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 ADAMTSL2Q86TH1 951 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 ZNF366Q8N895 744 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 TCEAL4Q96EI5 215 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SPATA16Q9BXB7 569 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 SLC46A2Q9BY10 475 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 FAM126AQ9BYI3 521 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-201ENST00000341247 NUDT4Q9NZJ9 180 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms