RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 RAP2CQ9Y3L5 183 aa9.54□□□□□ -0.88
PTCHD4-201ENST00000339488 TBX3O15119 743 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 TBC1D4O60343 1298 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 METTL18O95568 372 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 CBX7O95931 251 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ITGBL1O95965 494 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ALPLP05186 524 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ZNF37AP17032 561 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SSTR4P31391 388 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 CASP2P42575 452 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 NOMO3P69849 1222 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 STX5Q13190 355 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 OLIG2Q13516 323 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 DAG1Q14118 895 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 PDK2Q15119 407 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 RAB6CQ53S08 254 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 LINC00299Q6ZSB3 139 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 BEND5Q7L4P6 421 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SLC16A13Q7RTY0 426 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 PRSS48Q7RTY5 328 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ZSWIM9Q86XI8 627 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 UFD1Q92890 307 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 TMEM74Q96NL1 305 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 GTPBP2Q9BX10 602 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 RAB6CQ9H0N0 254 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ABCG4Q9H172 646 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 OR51E2Q9H255 320 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SPNS1Q9H2V7 528 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 RIBC2Q9H4K1 309 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 FAM49BQ9NUQ9 324 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 INTS10Q9NVR2 710 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 BFARQ9NZS9 450 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 PCDHGA2Q9Y5H1 932 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 PAPPAQ13219 1627 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 TCP10L2B9ZVM9 353 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 H0YAE9 185 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 PCDHGA12O60330 932 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 CXCL14O95715 111 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ANGPTL1O95841 491 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 HRGP04196 525 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 HMGN1P05114 100 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 FABP1P07148 127 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SNRPB2P08579 225 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 TSPAN8P19075 237 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SDHBP21912 280 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 NRIP1P48552 1158 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 PSMD8P48556 350 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SERPINB9P50453 376 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 GBX2P52951 348 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 BCAT1P54687 386 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 UBXN2AP68543 259 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ZNF45Q02386 682 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ORC2Q13416 577 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 TNK1Q13470 666 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 KRR1Q13601 381 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 TOR1AIP1Q5JTV8 583 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ZNF772Q68DY9 489 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 TEX261Q6UWH6 196 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ZNF534Q76KX8 674 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 DENND1CQ8IV53 801 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 C9orf62Q8N4C0 152 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 KIAA1958Q8N8K9 716 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ATG16L2Q8NAA4 619 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 TMC2Q8TDI7 906 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 PIGBQ92521 554 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SLC9A6Q92581 669 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 RBPMSQ93062 196 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SGK3Q96BR1 496 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ELMO2Q96JJ3 720 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SIGLEC10Q96LC7 697 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 P2RX7Q99572 595 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 PTPRHQ9HD43 1115 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 IL1RAPQ9NPH3 570 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 SDHAF3Q9NRP4 125 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 MTMR10Q9NXD2 777 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 CLCA3PQ9Y6N3 262 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 U3KQ87 197 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 LRP5O75197 1615 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 B4DXG7 233 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 EIF3DO15371 548 aaKnown RBP eCLIP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 HS6ST1O60243 411 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 HUS1O60921 280 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 MITFO75030 526 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 CDK1P06493 297 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ALDH3A2P51648 485 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 FCGRTP55899 365 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 C1QTNF8P60827 252 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ZNF543Q08ER8 600 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 RPA4Q13156 261 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 RAPSNQ13702 412 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 ENOSF1Q7L5Y1 443 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 DCLRE1CQ96SD1 692 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 MYOCQ99972 504 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 EIF2AK1Q9BQI3 630 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 CHCHD6Q9BRQ6 235 aa9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 CDCA7Q9BWT1 371 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 C11orf54Q9H0W9 315 aaPredicted RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 MRPL47Q9HD33 250 aaKnown RBP9.53□□□□□ -0.88
PTCHD4-201ENST00000339488 KLHL42Q9P2K6 505 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms