RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 HOXB2P14652 356 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 EEF1DP29692 281 aaKnown RBP15.2■□□□□ 0.02
LIMS1-202ENST00000338045 GPR1P46091 355 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 SMAD2Q15796 467 aaKnown RBP15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CCDC85BQ15834 202 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-202ENST00000338045 SH2D4BQ5SQS7 431 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 ZNF648Q5T619 568 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-202ENST00000338045 ANKS6Q68DC2 871 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 DLG3Q92796 817 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 PRR11Q96HE9 360 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-202ENST00000338045 FAR2Q96K12 515 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 RDH14Q9HBH5 336 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 TNFRSF12AQ9NP84 129 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CD274Q9NZQ7 290 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 ADAMTS6Q9UKP5 1117 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CDYLQ9Y232 598 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 RAD51BO15315 384 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 INPP4BO15327 924 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 FFAR2O15552 330 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 SNX2O60749 519 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 GPC4O75487 556 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 TM7SF2O76062 418 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CDK14O94921 469 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 UNC5CO95185 931 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 ASGR2P07307 311 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 FGF4P08620 206 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 MPC1LP0DKB6 136 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 COL9A1P20849 921 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CALRP27797 417 aaKnown RBP15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CTSCP53634 463 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CDH13P55290 713 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 ACTN3Q08043 901 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-202ENST00000338045 SLC9B1Q4ZJI4 515 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 RAET1GQ6H3X3 334 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 NEK10Q6ZWH5 1172 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 FRA10AC1Q70Z53 315 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CACUL1Q86Y37 369 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 ZNF483Q8TF39 744 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-202ENST00000338045 SORCS3Q9UPU3 1222 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 NCF1BA6NI72 391 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 OR2AG2A6NM03 316 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 NCF1CA8MVU1 366 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 TMEM233B4DJY2 109 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 DIAPH2O60879 1101 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 SLCO2B1O94956 709 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 T-ENOLP0DO92 83 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 NCF1P14598 390 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 AGTR2P50052 363 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 SH3BP2P78314 561 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 CLCQ05315 142 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 HSPA14Q0VDF9 509 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 LCP2Q13094 533 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 KRT72Q14CN4 511 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 PCBP2Q15366 365 aaKnown RBP eCLIP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 PHKG1Q16816 387 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 FBXO43Q4G163 708 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 BCL7AQ4VC05 210 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 METTL21CQ5VZV1 264 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 ADAMTSL4Q6UY14 1074 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 TMPRSS6Q8IU80 811 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 RASGRP3Q8IV61 690 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 MAELQ96JY0 434 aaKnown RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 NSUN5Q96P11 429 aaKnown RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 ZCCHC2Q9C0B9 1178 aaKnown RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 SLC2A4RGQ9NR83 387 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 UTP6Q9NYH9 597 aaKnown RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 TSR3Q9UJK0 312 aaKnown RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 PTBP2Q9UKA9 531 aaKnown RBP15.19■□□□□ 0.02
LIMS1-202ENST00000338045 PCTPQ9UKL6 214 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 PRUNE2Q8WUY3 3088 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 ATG2BQ96BY7 2078 aa15.19■□□□□ 0.02
LIMS1-202ENST00000338045 IGLON5A6NGN9 336 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 CAPN14A8MX76 684 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 E2F3O00716 465 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 NARSO43776 548 aaKnown RBP15.18■□□□□ 0.02
LIMS1-202ENST00000338045 LILRB5O75023 590 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 ATG13O75143 517 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 RNASEH2AO75792 299 aaKnown RBP15.18■□□□□ 0.02
LIMS1-202ENST00000338045 ATP5HO75947 161 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 FSBPO95073 299 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 GTF2A1P52655 376 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-202ENST00000338045 NCALDP61601 193 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 CCINQ13939 588 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 SKIV2LQ15477 1246 aaKnown RBP15.18■□□□□ 0.02
LIMS1-202ENST00000338045 ZNF658BQ4V348 819 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-202ENST00000338045 CDKL4Q5MAI5 379 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 ADGRG6Q86SQ4 1221 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 VRK3Q8IV63 474 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 AFAP1L2Q8N4X5 818 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 BEND7Q8N7W2 519 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-202ENST00000338045 ASZ1Q8WWH4 475 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 ELMO1Q92556 727 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 COX14Q96I36 57 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 NUF2Q9BZD4 464 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 ZBTB26Q9HCK0 441 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 TRIM39Q9HCM9 518 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 FBXL12Q9NXK8 326 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 SCML1Q9UN30 329 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 TRAF6Q9Y4K3 522 aa15.18■□□□□ 0.02
LIMS1-202ENST00000338045 TNPO3Q9Y5L0 923 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms