RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PPP3R1P63098 170 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 GDF6Q6KF10 455 aaPredicted RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 ZCCHC12Q6PEW1 402 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 RIPOR3Q96MK2 946 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 OSBPL11Q9BXB4 747 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 PRDM16Q9HAZ2 1276 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 PADI3Q9ULW8 664 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 DMTF1Q9Y222 760 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 CPED1A4D0V7 1026 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 LAG3P18627 525 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 ALDH4A1P30038 563 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 OC90Q02509 493 aaPredicted RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 MED27Q6P2C8 311 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 NAT14Q8WUY8 206 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 S100ZQ8WXG8 99 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 AZIN2Q96A70 460 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 HIST1H2AAQ96QV6 131 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 GPN1Q9HCN4 374 aaPredicted RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 CCDC177Q9NQR7 707 aaPredicted RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 MAGEL2Q9UJ55 1249 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 PER2O15055 1255 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 CHP2O43745 196 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 UGT2B11O75310 529 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 MT-CYBP00156 380 aaPredicted RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 AP2S1P53680 142 aaPredicted RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 CACNG1Q06432 222 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 TUSC3Q13454 348 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 NT5DC1Q5TFE4 455 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 CHADLQ6NUI6 762 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 AMIGO1Q86WK6 493 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 ZZZ3Q8IYH5 903 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 HDDC3Q8N4P3 179 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 OR5M3Q8NGP4 307 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 PHF12Q96QT6 1004 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 CPXM1Q96SM3 734 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 CHCHD6Q9BRQ6 235 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 GRIN2DO15399 1336 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 PRMT5O14744 637 aaPredicted RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 KMOO15229 486 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 HOXC6P09630 235 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 GMFBP60983 142 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 MEA1Q16626 185 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 UPF1Q92900 1129 aaKnown RBP eCLIP12.48□□□□□ -0.411e-18■■■■■ 58.5
SDC3-201ENST00000336798 CSPG4P5Q96PW8 444 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 FUCA2Q9BTY2 467 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 PFDN2Q9UHV9 154 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 ARPC4-TTLL3A0A0A6YYG9 625 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 FAM240BA0A1B0GVZ2 78 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 TTC24A2A3L6 582 aaPredicted RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 B4DGG1 531 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 SELPP16109 830 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 TIE1P35590 1138 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 NR1H2P55055 460 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 HSDL1Q3SXM5 330 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 C2orf27AQ580R0 203 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 BRMS1LQ5PSV4 323 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 REP15Q6BDI9 236 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 SPATA19Q7Z5L4 167 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 IQCHQ86VS3 1027 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 OR2AJ1Q8NGZ0 328 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 GRHL3Q8TE85 626 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 LPIN3Q9BQK8 851 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 MTRRQ9UBK8 725 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 MGAT4AQ9UM21 535 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 NCANO14594 1321 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 AVPR1BP47901 424 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 MAN2A2P49641 1150 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 ILF3Q12906 894 aaKnown RBP eCLIP12.48□□□□□ -0.41
SDC3-201ENST00000336798 KLF1Q13351 362 aaPredicted RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 TOR1AIP1Q5JTV8 583 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 SERPINA9Q86WD7 417 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 XYLT1Q86Y38 959 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 TRPV1Q8NER1 839 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 BRSK1Q8TDC3 778 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 POF1BQ8WVV4 589 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 GTPBP2Q9BX10 602 aaKnown RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 LRRC19Q9H756 370 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 RAB21Q9UL25 225 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 GOT2P00505 430 aaKnown RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 SLC35G6P0C7Q6 338 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 GANABQ14697 944 aaKnown RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 CRELD2Q6UXH1 353 aaPredicted RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 C12orf66Q96MD2 445 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 TRMT61BQ9BVS5 477 aaKnown RBP12.48□□□□□ -0.41
SDC3-201ENST00000336798 C8orf4Q9NR00 106 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 GMEB2Q9UKD1 530 aa12.48□□□□□ -0.41
SDC3-201ENST00000336798 PRH1P02810 166 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ZNF823P16415 610 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 NAA20P61599 178 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 PLGLB1Q02325 96 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 LIPEQ05469 1076 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ELP6Q0PNE2 266 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 RIN1Q13671 783 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 SLC5A9Q2M3M2 681 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 BBS12Q6ZW61 710 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ANKFN1Q8N957 763 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 PPTC7Q8NI37 304 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 TNFAIP8L1Q8WVP5 186 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 PIWIL1Q96J94 861 aaKnown RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 GTF2IRD1Q9UHL9 959 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms